Parental gene: | CKS1B, ENSPTRG00000001398 |
| Aliases: | None |
| Description: | Pan troglodytes cyclin-dependent kinases regulatory subunit 1 (CKS1B), mRNA. [Source:RefSeq mRNA;Acc:NM_001252546] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:133231369..133235970(+) |
>ENSPTRG00000001398
ATGTCGCACAAACAAATTTACTATTCGGACAAATACGACGACGAGGAGTTTGAGTATCGACATGTCATGCTGCCCAAGGA
CATAGCCAAGCTGGTCCCTAAAACCCATCTGATGTCTGAATCTGAATGGAGGAATCTTGGCGTTCAGCAGAGTCAGGGAT
GGGTCCATTATATGATCCATGAACCAGAACCTCACATCTTGCTGTTCCGGCGCCCACTACCCAAGAAACCAAAGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .65 RPM |
| SRP007412_cerebellum | 3 .23 RPM |
| SRP007412_heart | 4 .23 RPM |
| SRP007412_kidney | 8 .16 RPM |
| SRP007412_liver | 14 .44 RPM |
| SRP007412_testis | 15 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dipodomys ordii | ENSDORG00000003764 | possible_ortholog | 6 retrogenes | |
| Equus caballus | ENSECAG00000003460 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000003337 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000001347 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000173207 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000032213 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000028044 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011532 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016204 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000006384 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000000768 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000021093 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000042561 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000012383 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000029737 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012182 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_558 | 94.94 | 100.00 | Please wait, loading  |
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| 2. | retro_ptro_944 | 92.41 | 100.00 | Please wait, loading |
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| 3. | retro_ptro_2769 | 93.67 | 100.00 | Please wait, loading |
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| 4. | retro_ptro_3100 | 92.41 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000001398 retrocopies