Parental gene: | RPS16, ENSPTRG00000010970 |
| Aliases: | None |
| Description: | ribosomal protein S16 [Source:HGNC Symbol;Acc:10396] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 19:44658160..44660927(-) |
>ENSPTRG00000010970
ATGCCGTCCAAGGGCCCGCTGCAGTCGGTGCAGGTCTTCGGACGCAAGAAGACAGCGACAGCTGTGGCGCACTGCAAACG
CGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTAGACATCCGTGTCCGTGTAAAGGGTGGTGGTCACGTGGCCCAG
ATTTATGGTGAGTCCCAGGAACTGGGCGCATGGGGGAGGTGGCTCTGGGAGGGAGGCCTTCACAGCGCTCCTGTACCCTT
AAATTGTGTGTCTTTCTCACAGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGA
GGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAG
ATGCCGTCCAAGGGCCCGCTGCAGTCGGTGCAGGTCTTCGGACGCAAGAAGACAGCGACAGCTGTGGCGCACTGCAAACG
CGGCAATGGTCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTAGACATCCGTGTCCGTGTAAAGGGTGGTGGTCACGTGGCCCAG
ATTTATGGTGAGTCCCAGGAACTGGGCGCATGGGGGAGGTGGCTCTGGGAGGGAGGCCTTCACAGCGCTCCTGTACCCTT
AAATTGTGTGTCTTTCTCACAGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGA
GGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 216 .57 RPM |
| SRP007412_cerebellum | 203 .40 RPM |
| SRP007412_heart | 172 .46 RPM |
| SRP007412_kidney | 372 .58 RPM |
| SRP007412_liver | 365 .87 RPM |
| SRP007412_testis | 58 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014176 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000021093 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014170 | possible_ortholog | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000011359 | possible_ortholog | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000001527 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000015290 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000010743 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014414 | ortholog_one2one | 10 retrogenes | |
| Macropus eugenii | ENSMEUG00000010380 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000006110 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000019370 | possible_ortholog | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014388 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004497 | possible_ortholog | 4 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000006 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000016930 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019578 | possible_ortholog | 3 retrogenes | |
| Sorex araneus | ENSSARG00000000852 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000010712 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000020817 | possible_ortholog | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005241 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003571 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_548 | 68.48 | 63.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_565 | 71.25 | 54.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1223 | 68.00 | 68.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1318 | 94.50 | 74.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_1376 | 74.16 | 59.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1577 | 73.47 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1699 | 65.04 | 82.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2432 | 64.15 | 72.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2857 | 71.00 | 67.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2953 | 88.49 | 95.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2957 | 94.55 | 74.66 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000010970 retrocopies