Parental gene:

GPD1L, ENSSSCG00000021977

Aliases:None
Description:glycerol-3-phosphate dehydrogenase 1-like [Source:HGNC Symbol;Acc:28956]
Organism:Pig (Sus scrofa)
Coordinates:13:20616342..20666658(-)


>ENSSSCG00000021977
ATGGCAGCGTCACCCCTGAAAGTGTGCATCGTGGGCTCCGGGAACTGGGGTTCAGCTGTTGCAAAAATAATTGGTGATAA
TGTCAAGAAACTACAGAAGTTTGCCTCTACGGTCAAGATGTGGGTCTTTGAAGAAACTGTTAATGGGAGAAAACTGACAG
ACATCATCAATAACGACCATGAAAATGTGAAATATCTCCCTGGACATAAGCTGCCAGAAAATGTGGTTGCCGTCGCTAAC
CTTGGCGAGGCGGTGAAGGACGCAGACCTGCTGGTGTTTGTCATCCCCCACCAGTTCATCCACCGCATCTGTGACGAGAT
CACGGGGAGGGTGCCCAAGGATGCGCTGGGCATCACCCTCATCAAGGGCATAGACGAGGGTCCCGAGGGGCTGAAGCTCA
TTTCCGACATCATCCGAGAGAAGATGGGTATTGACATCAGCGTGTTGATGGGAGCCAACATTGCCAATGAGGTGGCCGCC
GGCAAGTTCTGTGAGACCACCATCGGCAGCAAGGTCATGGAGAATGGCCTTCTCTTCAAAGAACTTCTGCAGACTCCGAA
TTTTCGAATTACGGTGGTGGATGATGCAGACACCGTTGAACTTTGTGGTGCTCTGAAGAACATCGTGGCCGTGGGAGCTG
GGTTCTGTGATGGCCTCCGCTGTGGCGACAACACCAAAGCTGCCGTCATCCGTCTGGGGCTCATGGAAATGATTGCCTTT
GCCAGGATCTTCTGCAAGGGCCAGGTGTCTACGGCCACCTTCCTGGAGAGCTGTGGCGTGGCCGACCTGATCACCACCTG
CTATGGGGGCCGGAACCGCAGGGTTGCTGAGGCCTTTGCCAGGACCGGAAAGACCATCGAGGAACTGGAGAAGGAAATGC
TGAATGGGCAGAAGCTGCAAGGCCCTCAGACGGCCGCTGAGGTGTACCGCATCCTCAAGCAAAAGGGCCTGGTGGACAAG
TTTCCATTGTTTACTGCCGTCTACCAGATCTGCTATGAAGGCAGGCCCGTCCAAGAGATGTTGTCTTGTCTCCAGAGCCA
TCCAGAGCATATATAA

Library Parental gene expression (RPM)
SRP014902_placenta 13 .41 RPM
SRP014902_testis 30 .84 RPM
SRP018856_adipose 49 .15 RPM
SRP018288_kidney 157 .41 RPM
SRP018288_lung 78 .92 RPM
SRP018288_liver 79 .16 RPM
SRP018288_heart 385 .20 RPM
SRP035408_liver 40 .39 RPM
SRP035408_brain 12 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009826 ortholog_one2one 1 retrogene
retro_btau_1671,
Choloepus hoffmanni ENSCHOG00000012633 ortholog_one2one 5 retrogenes
retro_chof_1033, retro_chof_306, retro_chof_340, retro_chof_620, retro_chof_724,
Loxodonta africana ENSLAFG00000013996 ortholog_one2many 1 retrogene
retro_lafr_101,
Microcebus murinus ENSMICG00000011060 ortholog_one2one 1 retrogene
retro_mmur_1205,
Mus musculus ENSMUSG00000050627 ortholog_one2one 3 retrogenes
retro_mmus_1348, retro_mmus_2552, retro_mmus_3695,
Oryctolagus cuniculus ENSOCUG00000010093 ortholog_one2one 2 retrogenes
retro_ocun_1529, retro_ocun_1588,
Otolemur garnettii ENSOGAG00000013243 ortholog_one2many 1 retrogene
retro_ogar_285,
Procavia capensis ENSPCAG00000016132 ortholog_one2one 1 retrogene
retro_pcap_316,
Rattus norvegicus ENSRNOG00000026455 ortholog_one2one 2 retrogenes
retro_rnor_2035, retro_rnor_2474,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_154 88.29 99.72
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Download FASTA sequences of all ENSSSCG00000021977 retrocopies