RetrogeneDB ID: | retro_chof_724 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_140113:2470..3272(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPD1L | ||
Ensembl ID: | ENSCHOG00000012633 | ||
Aliases: | None | ||
Description: | glycerol-3-phosphate dehydrogenase 1-like [Source:HGNC Symbol;Acc:28956] |
Percent Identity: | 74.37 % |
Parental protein coverage: | 99.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VAVSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKEALGITLIKGIDKGPEGLKLISDIIREKMGID |
VAVSNLSE.VQDADL.VFV.PHQFIHRICDEITGRVPKEALG.T.I.G.D.GPE.LKLIS.II.EK..ID | |
Retrocopy | VAVSNLSEIVQDADLPVFVFPHQFIHRICDEITGRVPKEALGVTPIRGTDEGPERLKLISNIIPEKVSID |
Parental | ISVLMGANIANEVAADKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELCGALKN-VVAVGAG |
ISVLMGAN....VA..KFCE.TIGSKVM.NGLLFKELLQTPNFRITVV...D.VE.CGA.K....AVGA. | |
Retrocopy | ISVLMGAN----VACKKFCENTIGSKVMKNGLLFKELLQTPNFRITVVGGTDIVEFCGARKK<ILAVGAA |
Parental | FCDGLRCGDNTK-AAVIRLGLMEMIAFAKIFCKGHVSTATFLESCGVADLITTCYGGRNRRVAEAFARTG |
FCDGLRCGD.TK..AVI..G.MEMIAFA.IFCK..VSTATFLESCGV.DLITT.YGG.N.RVA.AF.RTG | |
Retrocopy | FCDGLRCGDSTK<TAVICQGFMEMIAFARIFCKD*VSTATFLESCGVVDLITTFYGGWNHRVAKAFTRTG |
Parental | KTIEELENEMLNGQKLQGPQTSAEVYRILKQKGLVDKFPLFTAVYQICYEGKSVQDMLSCLQSHPQH |
KTIEELEN..........P.TS......L.....V.KFPLFTAVYQICYEGKSVQDMLSCLQSHP.H | |
Retrocopy | KTIEELENK--DAE*AETPRTSNFC*SVLRPQ-TVNKFPLFTAVYQICYEGKSVQDMLSCLQSHPEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009826 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012633 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013996 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011060 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050627 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010093 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013243 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016132 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026455 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021977 | 1 retrocopy |