RetrogeneDB ID: | retro_amel_1295 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193161.1:702286..702690(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSAMEG00000011216 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 81.62 % |
Parental protein coverage: | 94.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK-PPKVAFTTRIYHPNINSN |
LA.DPPAQCS.GPVGDD.FH.QATIMGPNDS.YQG..FFLTI...TDYPFK...KVAFTTRIYHP.I.SN | |
Retrocopy | LAHDPPAQCSEGPVGDDVFHRQATIMGPNDSSYQGDIFFLTIPLLTDYPFK<TSKVAFTTRIYHPSIHSN |
Parental | GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM |
GSI.LDILRSQWSPALTISKVLLSICSLLC..N..DPLVPEIARIYKTDR.K.NR..REWTQ.YAM | |
Retrocopy | GSIYLDILRSQWSPALTISKVLLSICSLLCALNSGDPLVPEIARIYKTDRDKNNRVSREWTQRYAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |