Parental gene:

RPS20, ENSCPOG00000011697

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_64:1765079..1766012(+)


>ENSCPOG00000011697
CAGGCGTTTAAGGATACTGGAAAAACACCTGTGGAGCCGGAGGTGGCGATTCACCGAATTAGGATTACCCTCACCAGCCG
CAACGTGAAATCGCTGGAGAAGGTGTGTGCTGACTTGATCAGAGGTGCAAAGGAAAAGAATCTCAAAGTGAAAGGACCCG
TTCGCATGCCTACTAAGACCTTGAGAATCACTACAAGGAAAACGCCCTGTGGTGAAGGTTCTAAGACATGGGATCGCTTC
CAGATGAGAATCCACAAGCGACTCATTGATTTGCACAGTCCCTCTGAGATTGTGAAGCAGATTACTTCCATCAGCATCGA
GCCGGGAGTAGAGGTGGAAGTCACCATCGCAGATGCCTAA

Library Parental gene expression (RPM)
SRP017611_liver 92 .19 RPM
SRP017611_kidney 154 .94 RPM
SRP017611_brain 84 .43 RPM
SRP040447_lung 174 .78 RPM
SRP040447_skeletal_muscle 186 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006087 possible_ortholog 17 retrogenes
retro_amel_1067, retro_amel_1142, retro_amel_1146, retro_amel_1245, retro_amel_1405, retro_amel_1409, retro_amel_1442, retro_amel_1579, retro_amel_1619, retro_amel_1825, retro_amel_281, retro_amel_299, retro_amel_437, retro_amel_495, retro_amel_599, retro_amel_709, retro_amel_98,
Canis familiaris ENSCAFG00000029884 possible_ortholog 20 retrogenes
retro_cfam_1144, retro_cfam_1247, retro_cfam_1287, retro_cfam_1367, retro_cfam_1409, retro_cfam_1472, retro_cfam_1633, retro_cfam_1646, retro_cfam_1688, retro_cfam_1719, retro_cfam_1810, retro_cfam_1964, retro_cfam_1978, retro_cfam_1992, retro_cfam_2008, retro_cfam_2193, retro_cfam_559, retro_cfam_666, retro_cfam_672, retro_cfam_949,
Callithrix jacchus ENSCJAG00000016631 possible_ortholog 4 retrogenes
retro_cjac_3017, retro_cjac_319, retro_cjac_667, retro_cjac_749,
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
retro_etel_16, retro_etel_1814, retro_etel_2067,
Gorilla gorilla ENSGGOG00000001837 possible_ortholog 21 retrogenes
retro_ggor_1074, retro_ggor_1149, retro_ggor_1581, retro_ggor_1640, retro_ggor_1751, retro_ggor_1768, retro_ggor_1908, retro_ggor_2193, retro_ggor_2227, retro_ggor_2639, retro_ggor_2712, retro_ggor_2751, retro_ggor_2809, retro_ggor_2857, retro_ggor_410, retro_ggor_707, retro_ggor_727, retro_ggor_838, retro_ggor_851, retro_ggor_909, retro_ggor_977,
Loxodonta africana ENSLAFG00000002515 ortholog_one2one 8 retrogenes
retro_lafr_353, retro_lafr_378, retro_lafr_537, retro_lafr_719, retro_lafr_730, retro_lafr_851, retro_lafr_865, retro_lafr_880,
Myotis lucifugus ENSMLUG00000029059 possible_ortholog 2 retrogenes
retro_mluc_1187, retro_mluc_546,
Macaca mulatta ENSMMUG00000021314 possible_ortholog 1 retrogene
retro_mmul_16,
Mustela putorius furo ENSMPUG00000010452 ortholog_one2one 15 retrogenes
retro_mputfur_1094, retro_mputfur_1188, retro_mputfur_1313, retro_mputfur_1366, retro_mputfur_1374, retro_mputfur_1432, retro_mputfur_238, retro_mputfur_249, retro_mputfur_320, retro_mputfur_418, retro_mputfur_424, retro_mputfur_433, retro_mputfur_620, retro_mputfur_77, retro_mputfur_819,
Nomascus leucogenys ENSNLEG00000001214 ortholog_one2one 19 retrogenes
retro_nleu_1013, retro_nleu_1343, retro_nleu_1447, retro_nleu_1566, retro_nleu_1794, retro_nleu_1798, retro_nleu_1805, retro_nleu_1818, retro_nleu_2059, retro_nleu_2159, retro_nleu_2654, retro_nleu_2659, retro_nleu_2750, retro_nleu_2786, retro_nleu_2819, retro_nleu_2843, retro_nleu_3066, retro_nleu_382, retro_nleu_41,
Otolemur garnettii ENSOGAG00000007760 possible_ortholog 10 retrogenes
retro_ogar_1337, retro_ogar_1759, retro_ogar_177, retro_ogar_1927, retro_ogar_2203, retro_ogar_2286, retro_ogar_2576, retro_ogar_309, retro_ogar_310, retro_ogar_900,
Rattus norvegicus ENSRNOG00000008555 possible_ortholog 7 retrogenes
retro_rnor_142, retro_rnor_155, retro_rnor_192, retro_rnor_288, retro_rnor_381, retro_rnor_401, retro_rnor_58,
Sus scrofa ENSSSCG00000006249 possible_ortholog 12 retrogenes
retro_sscr_1123, retro_sscr_30, retro_sscr_567, retro_sscr_575, retro_sscr_577, retro_sscr_585, retro_sscr_611, retro_sscr_646, retro_sscr_691, retro_sscr_708, retro_sscr_724, retro_sscr_838,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_404 60.68 96.64
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2. retro_cpor_499 71.59 73.11
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3. retro_cpor_533 66.18 57.14
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4. retro_cpor_544 61.02 99.16
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5. retro_cpor_717 88.98 98.32
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6. retro_cpor_1002 57.89 89.92
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7. retro_cpor_1016 53.85 86.55
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8. retro_cpor_1064 77.53 73.95
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9. retro_cpor_1104 79.44 89.08
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10. retro_cpor_1507 70.00 91.60
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Download FASTA sequences of all ENSCPOG00000011697 retrocopies