RetrogeneDB ID: | retro_cpor_1016 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:34618868..34619170(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSCPOG00000011697 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.85 % |
Parental protein coverage: | 86.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVK-GPVRMPTKTLRITTRKTPCGEGSKT |
.T...PEV.IHRI.ITLT....KSLEKVC.....G.K.K....K.G......K..RI...KTP.GEG.KT | |
Retrocopy | ETSMDPEVRIHRIKITLTRHTMKSLEKVC-*FHQGYKGKEYQRK<GHICTGAKDFRISISKTPHGEGPKT |
Parental | WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV |
W..FQ.R.H..L..LH.PSE..KQ.TSISIEPG. | |
Retrocopy | WGCFQARAHTLLTGLHRPSE-AKQMTSISIEPGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .94 RPM |
SRP017611_liver | 0 .00 RPM | 92 .19 RPM |
SRP040447_lung | 0 .00 RPM | 174 .78 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 186 .40 RPM |