RetrogeneDB ID: | retro_btau_1465 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:90636330..90637194(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000027534 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C3 | ||
Ensembl ID: | ENSBTAG00000016709 | ||
Aliases: | None | ||
Description: | cytosolic 5'-nucleotidase 3 [Source:RefSeq peptide;Acc:NP_001032686] |
Percent Identity: | 97.57 % |
Parental protein coverage: | 96.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VKMMPEIQKNSVHIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPSCHNVIDNCKLITD |
..MMPEIQKNSVHIKNPTR.EEIICGLIKGGAAKLQIITDFDMTLS.FSYKGKRCPSCHNVIDN.KLITD | |
Retrocopy | IEMMPEIQKNSVHIKNPTRIEEIICGLIKGGAAKLQIITDFDMTLSQFSYKGKRCPSCHNVIDNYKLITD |
Parental | ECREKLLQLKEKYYAIEVDPLLTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEESDIMLKEGYENF |
ECREKLLQLKEKYYAIEVDP.LTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEESDIMLKEGYENF | |
Retrocopy | ECREKLLQLKEKYYAIEVDPVLTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEESDIMLKEGYENF |
Parental | FDKLQQYGIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNGLLKGFKGELIHVFNKHDGSLK |
FDKLQQY.IPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNGLLKGFKGELIHVFNKHDGSLK | |
Retrocopy | FDKLQQYSIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNGLLKGFKGELIHVFNKHDGSLK |
Parental | NTEYFNQLKNNSNIILLGDSQGDLKMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKDESLDVA |
NTEYFNQLKNNSNIILLGDSQGDLKMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKDESLDVA | |
Retrocopy | NTEYFNQLKNNSNIILLGDSQGDLKMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKDESLDVA |
Parental | NSILQKIL |
NSILQKIL | |
Retrocopy | NSILQKIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 26 .60 RPM |
ERP005899_muscle | 0 .16 RPM | 47 .72 RPM |
SRP017611_brain | 0 .00 RPM | 13 .16 RPM |
SRP017611_kidney | 0 .30 RPM | 54 .35 RPM |
SRP017611_liver | 0 .00 RPM | 3 .78 RPM |
SRP030211_testis | 0 .02 RPM | 5 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006624 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016709 | 1 retrocopy |
retro_btau_1465 ,
|
Canis familiaris | ENSCAFG00000003154 | 1 retrocopy | |
Equus caballus | ENSECAG00000011777 | 1 retrocopy | |
Homo sapiens | ENSG00000122643 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028164 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005546 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013182 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005981 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022912 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026363 | 2 retrocopies |