Parental gene:

NT5C3A, ENSSSCG00000022912

Aliases:None
Description:5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820]
Organism:Pig (Sus scrofa)
Coordinates:18:44383494..44425983(+)


>ENSSSCG00000022912
CAGGAGGACCCGTCCATGGACCGAGCGGCCGTGGCGAGGGTGGGCGCGGTAGCGAGCGCCAGCGTGTGCGCCCTGGTGGC
AGGGGTGGTGCTGGCCCAGTACATATTCACCTTGAGAAGGAAGACGGGCCGGAAGACCAAGATCATCGAGATGATGCCAG
AATTCCAGAAAAGTTCAGTTCGCATCAAGAATCCTACAAAAGTAGAAGAAATTATCTGTGGTCTTATCAAAGGAGGAGCT
GCCAAACTTCAGGTAATAACAGACTTTGATATGACACTGAGTCGATTTTCCTATAGAGGGAAAAGATGCCCATCATGTCA
TAATGTCATTGACAACTGTAAGCTAATTACAGATGAGTGTCGAGAAAAGTTACTACAACTAAAGGAAAAGTATTATGCTA
TTGAAATTGATCCTGTTCTTACTGTAGAAGAGAAGTACCCTTATATTGTGGAATGGTATACTAAATCACATGGTCTGCTT
ATTGAACAGGCTTTACCAAAAGCCAAACTTAAAGAAATTGTGGAAGAATCTGACATTATGCTCAAGGAAGGATATGAGAA
TTTCTTTGATAAGCTCCAGCAGTACAATATCCCTGTGTTCATATTTTCGGCTGGTATCGGTGATGTGCTAGAGGAGGTTA
TCCGTCAAGCTGGTGTTTATTATCCAAATGTCAAAGTGGTATCCAACTTCATGGATTTTGATGACAATGGGCTGCTCAGA
GGATTTAAAGGAGAACTAATTCATGTGTTTAACAAACATGATGGTTCCTTGAAGAATACGGAATATTTCAATCAACTAAA
AAACAATAGCAACATAATTCTGCTGGGAGACTCCCAAGGGGACTTAAAAATGGCAGACGGAGTAGCCAATGTTGAACACA
TTCTGAAAATTGGGTATCTAAACGATAGAGTGGATGAGCTTTTAGAAAAGTACATGGACTCTTATGATATTGTTCTAGTA
AGAGATGAATCATTGGACGTTGCCAACTCTATCTTACAGAAGATTCTATAA

Library Parental gene expression (RPM)
SRP014902_placenta 2 .52 RPM
SRP014902_testis 10 .33 RPM
SRP018856_adipose 5 .68 RPM
SRP018288_kidney 19 .80 RPM
SRP018288_lung 12 .42 RPM
SRP018288_liver 41 .90 RPM
SRP018288_heart 12 .36 RPM
SRP035408_liver 54 .48 RPM
SRP035408_brain 15 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006624 ortholog_one2one 1 retrogene
retro_amel_875,
Bos taurus ENSBTAG00000016709 ortholog_one2one 1 retrogene
retro_btau_1465,
Canis familiaris ENSCAFG00000003154 ortholog_one2one 1 retrogene
retro_cfam_1295,
Equus caballus ENSECAG00000011777 ortholog_one2one 1 retrogene
retro_ecab_1118,
Homo sapiens ENSG00000122643 ortholog_one2one 1 retrogene
retro_hsap_3084,
Gorilla gorilla ENSGGOG00000028164 ortholog_one2one 1 retrogene
retro_ggor_2119,
Mustela putorius furo ENSMPUG00000005546 ortholog_one2one 2 retrogenes
retro_mputfur_1175, retro_mputfur_577,
Pteropus vampyrus ENSPVAG00000013182 ortholog_one2one 2 retrogenes
retro_pvam_148, retro_pvam_706,
Rattus norvegicus ENSRNOG00000005981 ortholog_one2one 1 retrogene
retro_rnor_632,
Ictidomys tridecemlineatus ENSSTOG00000026363 ortholog_one2one 2 retrogenes
retro_itri_1325, retro_itri_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_540 80.67 79.17
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Download FASTA sequences of all ENSSSCG00000022912 retrocopies