RetrogeneDB ID: | retro_sscr_540 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:23318625..23319417(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C3A | ||
Ensembl ID: | ENSSSCG00000022912 | ||
Aliases: | None | ||
Description: | 5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820] |
Percent Identity: | 80.67 % |
Parental protein coverage: | 79.17 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | IEMMPEFQKSSVRIKNP-TKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLIT |
..M.PEFQ.SSV.I.NP.T..EEIICGL.KGGAAKL..ITDFDMTLS.FSYRGKRCP.CHNVIDNCKLIT | |
Retrocopy | VKMIPEFQ-SSVCI-NP>TRLEEIICGLNKGGAAKLRIITDFDMTLSQFSYRGKRCPLCHNVIDNCKLIT |
Parental | DECREKLLQLKEKYYAIEIDPVL-TVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYE |
DEC.EKLLQLKE.YY.IE.DPVL.TV.E.YPYIVEWY.KSHGLL.EQALPKAKL.EI.EES..MLKEGYE | |
Retrocopy | DECQEKLLQLKEEYYTIEMDPVL>TVKEQYPYIVEWYNKSHGLLAEQALPKAKLTEIMEESNVMLKEGYE |
Parental | NFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGS |
N..DKL.QY.I.VFIFSAG.G..LEEVI.QA.VYYPNV.VVSN.MDF..NGLL.GFKGE.IHVFNKHDGS | |
Retrocopy | NLYDKL*QYSISVFIFSAGTGNILEEVICQAAVYYPNVEVVSNVMDFYYNGLLKGFKGEPIHVFNKHDGS |
Parental | LKNTEYFNQLK-NNSNIILLGDSQGDLKMADGVANVEHILKIGYLNDRVDELLEKYMDS |
LKNTEYFNQLK.NNSNII.L.DS.GDL.MA.GV.NVEHILK.GYLNDRVDELL.KYMDS | |
Retrocopy | LKNTEYFNQLK>NNSNII-LADS*GDL*MACGVTNVEHILKTGYLNDRVDELLGKYMDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 2 .52 RPM |
SRP014902_testis | 0 .00 RPM | 10 .33 RPM |
SRP018288_heart | 0 .03 RPM | 12 .36 RPM |
SRP018288_kidney | 0 .00 RPM | 19 .80 RPM |
SRP018288_liver | 0 .00 RPM | 41 .90 RPM |
SRP018288_lung | 0 .10 RPM | 12 .42 RPM |
SRP018856_adipose | 0 .00 RPM | 5 .68 RPM |
SRP035408_brain | 0 .00 RPM | 15 .53 RPM |
SRP035408_liver | 0 .00 RPM | 54 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006624 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016709 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003154 | 1 retrocopy | |
Equus caballus | ENSECAG00000011777 | 1 retrocopy | |
Homo sapiens | ENSG00000122643 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028164 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005546 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013182 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005981 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022912 | 1 retrocopy |
retro_sscr_540 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000026363 | 2 retrocopies |