RetrogeneDB ID: | retro_pvam_706 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_885:134299..134901(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C3A | ||
Ensembl ID: | ENSPVAG00000013182 | ||
Aliases: | None | ||
Description: | 5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820] |
Percent Identity: | 67.8 % |
Parental protein coverage: | 60.6 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | IEMMPELQKNSVRIKNPTR-VEEILCGLIKGGAVKLQIITDFD-MTLSRFSYEGKRCPTCHNVIDNCKLV |
..MMPE..K.SV.IKN.TR.VEEI.CGLIKG.AVKLQI.TDF..MTLSRFS...KR.PTCHN.IDN.KLV | |
Retrocopy | VKMMPEFWKSSVCIKNSTRRVEEIICGLIKGEAVKLQIVTDFV<MTLSRFS*KRKRSPTCHNIIDNRKLV |
Parental | SDECRKKLLQLKEKYYAIEIDPLLTVEEKFPHMEEWYTKSHSLLVEQALPKDKLREIVAESDVMLKEGYE |
.D..R.K.L....K.........L....K...M.EWY.KSH.LLVEQALPK.KL.EIVAESDVMLKE..E | |
Retrocopy | PDK-RQKKLLQQRKNMLLKL--ILFLP*KYSYMVEWYSKSHGLLVEQALPKAKLKEIVAESDVMLKEE*E |
Parental | KFFDRLQQHSVPVFIFSAGIGDVLEEIIRQAGVYYPNVKVVSNFMDFDDNGVLKGFKGELIHVFN |
.FFDRL..HS.PVFIFSAGI.DVLEEII.Q.GVYYPNVK.VSNFMDFDDNGVL..FKG.L....N | |
Retrocopy | NFFDRL*PHSIPVFIFSAGISDVLEEIIHQTGVYYPNVKLVSNFMDFDDNGVLEEFKGGLMYLTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006624 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016709 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003154 | 1 retrocopy | |
Equus caballus | ENSECAG00000011777 | 1 retrocopy | |
Homo sapiens | ENSG00000122643 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028164 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005546 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010634 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013182 | 2 retrocopies |
retro_pvam_148, retro_pvam_706 ,
|
Rattus norvegicus | ENSRNOG00000005981 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022912 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026363 | 2 retrocopies |