RetrogeneDB ID: | retro_btau_1494 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:61410273..61411071(-) | ||
Located in intron of: | ENSBTAG00000027569 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSBTAG00000011559 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q2TBQ5] |
Percent Identity: | 95.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAIL |
MPKGKKAKGKKVAPAPA.VKKQE.KKVVNPLFEK.PKNFG..QDIQPKRDLTRFVKWPRYIRLQ.QRAIL | |
Retrocopy | MPKGKKAKGKKVAPAPAMVKKQESKKVVNPLFEKWPKNFGFTQDIQPKRDLTRFVKWPRYIRLQQQRAIL |
Parental | YKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV |
YKRLKVPPAINQFTQALD.QTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV | |
Retrocopy | YKRLKVPPAINQFTQALDPQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGV |
Parental | NTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSE |
.TVTTLVE.KKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLV.RKTCTTVAFTQVNSE | |
Retrocopy | DTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVYRKTCTTVAFTQVNSE |
Parental | DKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
DKSALAKLVEAIRTNYNDRYDEIRRHWGG.VLGPKSVA.I.KLEKAKAKELATKLG | |
Retrocopy | DKSALAKLVEAIRTNYNDRYDEIRRHWGGSVLGPKSVACITKLEKAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 158 .18 RPM |
ERP005899_muscle | 1 .90 RPM | 1161 .94 RPM |
SRP017611_brain | 0 .32 RPM | 183 .36 RPM |
SRP017611_kidney | 0 .41 RPM | 336 .25 RPM |
SRP017611_liver | 0 .08 RPM | 280 .21 RPM |
SRP030211_testis | 0 .58 RPM | 289 .24 RPM |