RetrogeneDB ID: | retro_hsap_4754 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:127447258..127447906(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235735 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSG00000148303 | ||
Aliases: | RPL7A, L7A, SURF3, TRUP | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 66.51 % |
Parental protein coverage: | 80.83 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | KKAKGKKV-APAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKR |
.KAK.KKV.A.APAVV.KQE.KKVVN.LFEKRP.N.G.GQDI.PKR.L...VK.P.YI.L..Q....YK. | |
Retrocopy | RKAKKKKV>A*APAVVRKQEGKKVVNLLFEKRPNNLGTGQDI*PKRELIHLVKRPCYIQLPQQKPVSYKQ |
Parental | LKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLL-ARAEKKAAGKGDVPTKRPPVLRAGVNT |
LKV...INQ.TQALD.QTAT.LLKLAHKYR.E.KQ.K...LL....EKKAA..GDV.TKR.PVL.AGVNT | |
Retrocopy | LKVLHKINQSTQALDHQTATYLLKLAHKYRQEAKQGKQHILL>IQVEKKAASNGDVSTKRRPVLPAGVNT |
Parental | VTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDK |
VT.LV.NKKAQLVV..H..D.IELV.FLPA........Y.IIK.KAR.G.L..RKT.TT.AFT.VNSED. | |
Retrocopy | VTSLVKNKKAQLVVTVHNMDLIELVMFLPAM*C*VEISYWIIKEKARWGQLIQRKTYTTTAFTPVNSEDI |
Parental | -GALAKLV |
.GALAKLV | |
Retrocopy | >GALAKLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 630 .89 RPM |
bodymap2_adrenal | 0 .00 RPM | 818 .53 RPM |
bodymap2_brain | 0 .00 RPM | 138 .06 RPM |
bodymap2_breast | 0 .00 RPM | 428 .06 RPM |
bodymap2_colon | 0 .00 RPM | 800 .16 RPM |
bodymap2_heart | 0 .00 RPM | 174 .83 RPM |
bodymap2_kidney | 0 .00 RPM | 375 .99 RPM |
bodymap2_liver | 0 .00 RPM | 230 .18 RPM |
bodymap2_lung | 0 .00 RPM | 639 .05 RPM |
bodymap2_lymph_node | 0 .00 RPM | 731 .09 RPM |
bodymap2_ovary | 0 .00 RPM | 1017 .07 RPM |
bodymap2_prostate | 0 .00 RPM | 927 .73 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 405 .24 RPM |
bodymap2_testis | 0 .00 RPM | 481 .94 RPM |
bodymap2_thyroid | 0 .00 RPM | 506 .97 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 875 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2960 |
Pongo abelii | retro_pabe_3700 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |