Parental gene:

RPL7A, ENSPVAG00000017045

Aliases:None
Description:ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_11221:22194..25307(+)


>ENSPVAG00000017045
ATGCCTAAGGGAAAGAAGGCTAAGGGGAAGAAGGTGGCCCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCCAAGAAGGT
GGTAAATCCCCTGTTTGAGAAAAGACCCAAGAATTTTGGTATTGGACAGGACATCCAGCCCAAAAGGGACCTCACCCGCT
TTGTCAAATGGCCCCGCTACATTCGGCTGCAGCGGCAAAGGGCTATTCTCTATAAGCGCCTGAAAGTGCCTCCTGCGATT
AACCAGTTCACCCAGGCTTTGGACCGCCAAACAGCTACTCAGCTGCTGAAGCTGGCCCACAAGTACAGGCCGGAGACGAA
GCAAGAGAAGAAGCAGAGGTTGTTGGCTCGGGCTGAGAAAAAGGCCGCCGGCAAAGGGGATGTCCCCACCAAGAGGCCAC
CTGTCCTTCGAGCAGGCGTCAATACTGTCACCACTCTGGTGGAGAACAAGAAGGCCCAGCTGGTCGTGATTGCACATGAC
GTGGATCCCATCGAGCTGGTCGTCTTCCTGCCTGCCCTGTGCCGGAAGATGGGGGTGCCTTACTGCATCATCAAGGGGAA
GGCCCGGCTGGGGCGCCTGGTCCACAGGAAGACCTGTACCACCGTTGCCTTCACGCAAGTCAACTCGGAAGACAAGGGAG
CGCTGGCTAAGCTGGTGGAAGCTATCCGGACCAATTACAACGACAGATACGACGAGATTCGCCGTCACTGGGGAGGCAAC
GTCCTGGGCCCAAAGTCGGTGGCCCGCATCGCCAAGCTGGAAAAGGCTAAGGCGAAAGAACTGGCCACCAAACTGGGCTG
A

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Bos taurus ENSBTAG00000011559 ortholog_one2one 5 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2one 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Homo sapiens ENSG00000148303 ortholog_one2one 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2one 16 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2one 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 ortholog_one2one 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_125 77.18 56.02
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2. retro_pvam_270 77.61 99.62
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3. retro_pvam_307 67.66 74.81
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4. retro_pvam_333 67.30 57.52
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5. retro_pvam_510 82.05 57.89
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6. retro_pvam_540 68.16 67.29
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7. retro_pvam_640 77.22 67.29
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8. retro_pvam_1240 83.52 99.62
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9. retro_pvam_1288 81.10 61.65
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10. retro_pvam_1371 67.56 97.37
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11. retro_pvam_1472 75.46 100.00
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Download FASTA sequences of all ENSPVAG00000017045 retrocopies