Parental gene:

RPL7A, ENSBTAG00000011559

Aliases:None
Description:60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q2TBQ5]
Organism:Cow (Bos taurus)
Coordinates:11:104311807..104315125(+)


>ENSBTAG00000011559
ATGCCGAAGGGAAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCGGCCGTGGTGAAGAAGCAGGAGGCCAAGAAGGT
GGTCAACCCCCTGTTCGAGAAGAGGCCCAAGAATTTTGGCATTGGACAGGACATCCAACCCAAGAGGGACCTCACCCGCT
TTGTCAAATGGCCCCGCTACATCCGGCTGCAGCGGCAAAGGGCTATTCTCTATAAGCGGCTGAAAGTGCCTCCTGCAATT
AACCAGTTCACGCAGGCCTTGGACCGACAAACAGCTACTCAACTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAA
GCAAGAGAAGAAGCAGAGGCTGCTGGCCCGAGCTGAGAAGAAAGCCGCGGGCAAAGGCGATGTCCCCACCAAGAGGCCAC
CTGTCCTTCGAGCAGGGGTCAACACGGTCACCACCCTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATCGCTCACGAC
GTGGATCCCATTGAGCTCGTGGTCTTCCTGCCTGCCCTGTGCCGCAAGATGGGGGTTCCCTACTGCATCATCAAGGGCAA
GGCCCGGCTGGGGCGCCTGGTGCACAGGAAGACGTGCACCACCGTAGCCTTCACACAAGTCAACTCGGAGGACAAGAGTG
CCCTGGCTAAGCTGGTGGAAGCCATCAGGACCAATTACAACGACAGATACGATGAGATCCGTCGTCACTGGGGAGGCAAC
GTCCTGGGGCCGAAGTCGGTGGCGCGCATCGCCAAGCTGGAAAAGGCGAAGGCCAAAGAGCTGGCCACCAAGCTGGGCTG
A

Library Parental gene expression (RPM)
SRP017611_brain 183 .36 RPM
SRP017611_kidney 336 .25 RPM
SRP017611_liver 280 .21 RPM
ERP005899_muscle 1161 .94 RPM
ERP005899_liver 158 .18 RPM
SRP030211_testis 289 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2one 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Homo sapiens ENSG00000148303 ortholog_one2one 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2one 16 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2one 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 ortholog_one2one 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Pteropus vampyrus ENSPVAG00000017045 ortholog_one2one 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_564 71.07 59.02
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2. retro_btau_890 69.08 56.39
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3. retro_btau_936 85.09 60.53
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4. retro_btau_1345 93.26 100.00
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5. retro_btau_1494 95.11 100.00
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Download FASTA sequences of all ENSBTAG00000011559 retrocopies