RetrogeneDB ID: | retro_pvam_1240 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_47106:301..1088(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSPVAG00000017045 | ||
Aliases: | None | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 83.52 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY |
PKGKK.KGK...PAPAVVKKQ.AKKVVNPLFEK.PKNFGIGQDIQPKRD.TRFVKWP.YI.LQRQ.AIL. | |
Retrocopy | PKGKKGKGKNMVPAPAVVKKQKAKKVVNPLFEKIPKNFGIGQDIQPKRDVTRFVKWPCYIQLQRQNAILC |
Parental | KRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK-KAAGKGDVPTKRPPVLRAGV |
KRLKVPP.IN.FTQALDRQTATQLLKLAHKYR.ETKQ..KQ.....AEK..AAGKGDVP.KRP.VL.AGV | |
Retrocopy | KRLKVPPVINLFTQALDRQTATQLLKLAHKYRQETKQD-KQQIVSWAEK<NAAGKGDVP-KRPLVLWAGV |
Parental | NTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGV-PYCIIKGKARLGRLVHRKTCTTVAFTQVNS |
NTVTTLVENKKAQLVV..H..DPI.LVVFLPALC.KM...PY.I.KGKARLG.LVHRKTCTTVAFTQVNS | |
Retrocopy | NTVTTLVENKKAQLVVTVHNADPIKLVVFLPALCHKMSL<PYYIVKGKARLGGLVHRKTCTTVAFTQVNS |
Parental | EDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
EDKGALAKLVEAIRTNYN.RYDEI..HWGGNVLGPK.VA.IAKLEKAK.KELATKLG | |
Retrocopy | EDKGALAKLVEAIRTNYNNRYDEICPHWGGNVLGPKLVACIAKLEKAKVKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |