RetrogeneDB ID: | retro_btau_1598 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:17707436..17707905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSBTAG00000006059 | ||
Aliases: | TSN, C3PO | ||
Description: | Translin [Source:UniProtKB/Swiss-Prot;Acc:Q08DM8] |
Percent Identity: | 82.8 % |
Parental protein coverage: | 68.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVTEILGIEPDREKGFHLDVEDYLS |
TSLKTKFPA...YRFHEH.RFVLQ.LVFLAAF.VYLE.ET.V.REAVTEILG.EPD.EKGFHLDV.DYLS | |
Retrocopy | TSLKTKFPAG*HYRFHEH*RFVLQCLVFLAAFGVYLETETIVNREAVTEILGTEPDQEKGFHLDVDDYLS |
Parental | GVLILASELSRLSVNSVTAGDYSRPLHISTFI-NELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYD |
GVLIL.SEL.RLS.N.VTAGDYSRPLHISTFI.NELDSG..LLNLKNDSLRKRY.GLKYDVKKV.EVVYD | |
Retrocopy | GVLILTSELLRLSINRVTAGDYSRPLHISTFI>NELDSGLCLLNLKNDSLRKRYEGLKYDVKKVKEVVYD |
Parental | LSIRGFNKETAAACVEK |
LSI.G.N.E.AAACV.. | |
Retrocopy | LSIQGCNREPAAACVKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 8 .87 RPM |
ERP005899_muscle | 0 .00 RPM | 14 .73 RPM |
SRP017611_brain | 0 .00 RPM | 20 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .57 RPM |
SRP017611_liver | 0 .00 RPM | 13 .74 RPM |
SRP030211_testis | 0 .00 RPM | 25 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy |
retro_btau_1598 ,
|
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |