RetrogeneDB ID: | retro_ogar_2875 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873674.1:1903433..1903865(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSOGAG00000030436 | ||
Aliases: | None | ||
Description: | translin [Source:HGNC Symbol;Acc:12379] |
Percent Identity: | 89.58 % |
Parental protein coverage: | 63.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT |
MS.SEIFVELQGFLAA.QDI.EEI.KVVQ.LEQTA.EILTLLQGVHQGAGFQDIPKRCLKAREHFGTVK. | |
Retrocopy | MSLSEIFVELQGFLAAKQDIQEEI*KVVQRLEQTACEILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKM |
Parental | HLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDY |
HLT.LKTKF.AEQYYRFHEHWRFVLQ.LVFLAAFVVYLETETLVTREAVTEILG.EP.R.KGFHLD.EDY | |
Retrocopy | HLTTLKTKFLAEQYYRFHEHWRFVLQCLVFLAAFVVYLETETLVTREAVTEILGLEPHRGKGFHLDAEDY |
Parental | LSGV |
LSG. | |
Retrocopy | LSGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies |
retro_ogar_1221, retro_ogar_2875 , retro_ogar_3426,
|
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |