RetrogeneDB ID: | retro_tsyr_1593 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_502604:540..1017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSTSYG00000004395 | ||
Aliases: | None | ||
Description: | translin [Source:HGNC Symbol;Acc:12379] |
Percent Identity: | 88.75 % |
Parental protein coverage: | 70.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILG |
PKR.LK..EHFGT.KTHLTSLKTKFP.EQYYRFHEHWRFVLQ.LVFLAAFVVYLETETLVT.E.VTEILG | |
Retrocopy | PKRRLKT*EHFGTAKTHLTSLKTKFP-EQYYRFHEHWRFVLQCLVFLAAFVVYLETETLVT*EVVTEILG |
Parental | IEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPLHISTFINELDSGFRLLNLKNDSLRKR |
IEPD.EKGFHLD.EDYLSGVLILASELSRLSVN.VTAGDY..PLHI.TFINELDSGFRLLNLKNDSLRK. | |
Retrocopy | IEPDWEKGFHLDIEDYLSGVLILASELSRLSVNNVTAGDYSPPLHIYTFINELDSGFRLLNLKNDSLRKC |
Parental | YDGLKYDVKKVEEVVYDLSI |
YD.LKYDVKKVEEVV..LSI | |
Retrocopy | YDRLKYDVKKVEEVVCNLSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |
retro_tsyr_1593 ,
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