RetrogeneDB ID: | retro_ogar_1221 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873539.1:2671990..2672654(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSOGAG00000030436 | ||
Aliases: | None | ||
Description: | translin [Source:HGNC Symbol;Acc:12379] |
Percent Identity: | 67.69 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREH-FGTVK |
MSVS.I.VELQGF............K...SLEQTA.EILTLLQ..HQG.GFQ.IPKRC.KA.EH.FGT.K | |
Retrocopy | MSVSKILVELQGFWLPSRISKRQSEKL*-SLEQTACEILTLLQRFHQGTGFQVIPKRCVKA*EH<FGTLK |
Parental | THLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED |
THLTSLKTKFPA.Q.YR.H..WRFV.Q.LV.LA.FV..L.T..LVT.EAVTEILGIEPD.EKG.HLDV.D | |
Retrocopy | THLTSLKTKFPAKQDYRLHQQWRFVSQHLVILAVFVC-LKTAILVTQEAVTEILGIEPDQEKGLHLDV-D |
Parental | YLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKV-EEV |
YL..VL.LA.....LSV..VTAGDYS..LHISTFI..LDS.F.LLNLKN.SLRK..DGLKYD.K.V..EV | |
Retrocopy | YLAAVLLLAR--GELSVDTVTAGDYSQLLHISTFISDLDSSFHLLNLKNYSLRKPCDGLKYDMKTV<KEV |
Parental | VYDLSIRGFNKETAAACVE |
.YDLSI.GF.K..A.A.VE | |
Retrocopy | AYDLSI*GFHKDVATAWVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies |
retro_ogar_1221 , retro_ogar_2875, retro_ogar_3426,
|
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |