RetrogeneDB ID: | retro_ogar_3426 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873830.1:345148..345823(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSOGAG00000030436 | ||
Aliases: | None | ||
Description: | translin [Source:HGNC Symbol;Acc:12379] |
Percent Identity: | 72.37 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | VSEIFVELQGFLAAEQDIREEIR-KVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTH |
V.EI...L..FL.AEQ.........VVQ.LEQTA.EILTLLQGVH.G.GFQDI..RCLK..EHF.TVKTH | |
Retrocopy | VREILMKLWSFLVAEQYMGRKTE<RVVQRLEQTACEILTLLQGVHLGPGFQDISNRCLKD*EHFSTVKTH |
Parental | LTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYL |
LTSL.TKF.AEQYYRF..H.RFVLQ.LV.L..FVVYLE.E.LVT.EAV.EILGIEPD.EKGFH..VEDYL | |
Retrocopy | LTSLNTKFLAEQYYRFCDH*RFVLQYLVILTIFVVYLEAEILVTPEAVAEILGIEPDQEKGFHIYVEDYL |
Parental | SGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNL-KNDSLRKRYDGLKYDVKKVEEVVY |
.GV.ILA.EL..LSV.S.TAGDYSRP.HI.TFI.ELDSGF.LL.L.KNDSL.K.YDGLKY..KKVEEVVY | |
Retrocopy | *GVIILANEL*NLSV-SATAGDYSRPFHIFTFISELDSGFCLLSL>KNDSLMKCYDGLKYNMKKVEEVVY |
Parental | DLSIRGFNKETAAACVEK |
DLS..GF.KETA..CVEK | |
Retrocopy | DLSTWGFSKETADTCVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies |
retro_ogar_1221, retro_ogar_2875, retro_ogar_3426 ,
|
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |