RetrogeneDB ID: | retro_hsap_3760 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:93407404..93407829(+) | ||
Located in intron of: | ENSG00000127928 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225898 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSN | ||
Ensembl ID: | ENSG00000211460 | ||
Aliases: | TSN, BCLF-1, C3PO, RCHF1, REHF-1, TBRBP, TRSLN | ||
Description: | translin [Source:HGNC Symbol;Acc:12379] |
Percent Identity: | 61.64 % |
Parental protein coverage: | 64.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVL-ILASELSR |
...HEHWRFVL...V.....V..LETE...T.EA.TEI..IEPD.EK.FH.DVED.LSGV..ILASEL.R | |
Retrocopy | HEVHEHWRFVLPHTVVFPELVACLETE---TPEAITEIRVIEPDKEKRFHVDVEDPLSGVQ<ILASELLR |
Parental | LSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKN-DSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETA |
LS.....AGD.S.PLH..TF.NE....F.LL.LK...SLRK.YDGL..DVKK.EEV.Y.LSI.GFNKE.. | |
Retrocopy | LSLSGMSAGDNSQPLHVATFNNEWHPNFHLLSLKHYSSLRKPYDGLW*DVKKTEEVFYILSIQGFNKEIE |
Parental | AACVEK |
AAC.EK | |
Retrocopy | AACTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 67 .41 RPM |
bodymap2_adrenal | 0 .00 RPM | 104 .56 RPM |
bodymap2_brain | 0 .00 RPM | 106 .21 RPM |
bodymap2_breast | 0 .00 RPM | 87 .22 RPM |
bodymap2_colon | 0 .00 RPM | 65 .99 RPM |
bodymap2_heart | 0 .02 RPM | 41 .81 RPM |
bodymap2_kidney | 0 .00 RPM | 91 .93 RPM |
bodymap2_liver | 0 .00 RPM | 40 .26 RPM |
bodymap2_lung | 0 .00 RPM | 34 .83 RPM |
bodymap2_lymph_node | 0 .00 RPM | 58 .66 RPM |
bodymap2_ovary | 0 .04 RPM | 127 .17 RPM |
bodymap2_prostate | 0 .00 RPM | 73 .66 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 48 .94 RPM |
bodymap2_testis | 0 .00 RPM | 155 .84 RPM |
bodymap2_thyroid | 0 .00 RPM | 111 .31 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 98 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2551 |
Gorilla gorilla | retro_ggor_2528 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006059 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025740 | 2 retrocopies | |
Felis catus | ENSFCAG00000027149 | 1 retrocopy | |
Homo sapiens | ENSG00000211460 | 1 retrocopy |
retro_hsap_3760 ,
|
Gorilla gorilla | ENSGGOG00000002216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012656 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021119 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000147 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001202 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023529 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030436 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012420 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004395 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |