RetrogeneDB ID: | retro_btau_711 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:2244390..2244762(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSBTAG00000017267 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 5A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P00426] |
Percent Identity: | 72.58 % |
Parental protein coverage: | 81.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PAPGQAAAVQSLRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRAC |
PAP...AA.QS..CY.H.S.ETDEE.D.RWVTYF...D.DA.ELRKG.N.L.GYDLVPEPKI..A.L.A. | |
Retrocopy | PAPCPPAAIQSIHCYFHRSQETDEECDTRWVTYFKTSDVDAQELRKGKNILAGYDLVPEPKITVAGL*AY |
Parental | RRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
..LNDFAS.V.I.EV.K.KAGPHKEIYP.VIQELRPTLNELGIS.PEELGL.KV | |
Retrocopy | LCLNDFASTVHIIEVIKSKAGPHKEIYPCVIQELRPTLNELGISSPEELGLHKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 43 .26 RPM |
ERP005899_muscle | 0 .00 RPM | 180 .75 RPM |
SRP017611_brain | 0 .00 RPM | 65 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 163 .65 RPM |
SRP017611_liver | 0 .00 RPM | 37 .07 RPM |
SRP030211_testis | 0 .14 RPM | 61 .72 RPM |