RetrogeneDB ID: | retro_chof_1291 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_25233:5578..6007(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSCHOG00000006108 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Va [Source:HGNC Symbol;Acc:2267] |
Percent Identity: | 69.18 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CAAAAAAAARAGPRGLLHRAPAHGLTAAVQSVRCYSHGSHETDEKFDARWVTYFNKPDIDAWELRKGMNT |
C...A...A..G.........AH.....VQSV.CYSHGS..TDE.FDARWVT.F.KPDIDAWEL.KGMN. | |
Retrocopy | CSHLASLQAAQGGP*AFCTCRAHSPATMVQSVCCYSHGSPKTDEEFDARWVTSFHKPDIDAWELHKGMNM |
Parental | LVGYD-LVPEPKIIDAALRACRRLNDFASAVRI-LEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEE |
LVGYD.LVPEPKII..AL.AC.RLN.FAS.VRI.LEVVK.K.GPHKEIYPYVI..L..TLNELGISTPEE | |
Retrocopy | LVGYD<LVPEPKIIGTALWAC*RLNNFASTVRI>LEVVKGK-GPHKEIYPYVIWKLGLTLNELGISTPEE |
Parental | LGLDKV |
L.LDKV | |
Retrocopy | LSLDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |