RetrogeneDB ID: | retro_cpor_970 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:18663620..18663974(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSCPOG00000024832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.11 % |
Parental protein coverage: | 82. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TLSPVAAVLSARCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR |
T.S....V.S..CYSHGSHETD.EFDA..VTY.NKP.IDA.EL.KG.NTL.GYDL...PK........CR | |
Retrocopy | TASLITTVQSVCCYSHGSHETDKEFDACFVTYLNKPNIDA*ELCKGINTLSGYDLFQNPK---SRMLLCR |
Parental | RLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
...DFASA..IL.VVKD.AGPHK..YPYVIQELRPTLNELGISTPEELG.DKV | |
Retrocopy | --HDFASAIQILGVVKDTAGPHKATYPYVIQELRPTLNELGISTPEELGVDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 94 .27 RPM |
SRP017611_kidney | 0 .10 RPM | 212 .41 RPM |
SRP017611_liver | 0 .04 RPM | 104 .20 RPM |
SRP040447_lung | 0 .18 RPM | 53 .19 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 433 .35 RPM |