RetrogeneDB ID: | retro_cfam_29 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 27:42073947..42074403(-) | ||
Located in intron of: | ENSCAFG00000015707 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000024501 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000017977 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 5A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F1P6A4] |
Percent Identity: | 96.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLGAALRRGAVAAAAAAARASPRGLRYPAPAPGPAAAVQSVRCYSHGSHETDEEFDARWVTYFNKPDIDA |
MLGAALRRG.VAAAAA..RASP.GLRYPAPAP.PA.AVQSVRCYSHGSHETDEEFDARWVTYFNKPDIDA | |
Retrocopy | MLGAALRRGTVAAAAA--RASPQGLRYPAPAPSPATAVQSVRCYSHGSHETDEEFDARWVTYFNKPDIDA |
Parental | WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNEL |
WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNEL | |
Retrocopy | WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNEL |
Parental | GISTPEELGLDKV |
GISTPEELGLDKV | |
Retrocopy | GISTPEELGLDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 8 .19 RPM | 39 .18 RPM |
SRP017611_brain | 8 .65 RPM | 23 .02 RPM |
SRP017611_kidney | 23 .77 RPM | 67 .69 RPM |
SRP017611_liver | 8 .12 RPM | 19 .29 RPM |