RetrogeneDB ID: | retro_rnor_1867 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:14460821..14461259(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000022490 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox5a | ||
Ensembl ID: | ENSRNOG00000018816 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 5A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P11240] |
Percent Identity: | 96.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLAAALRRCTAAAAARGLLHPVSAPSPAAAVCSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGM |
MLA.ALRRCTAAAAARGLLHPVSAPSPAAAVCS.RCYSH.SHETDEEFDARWVTY.NKPDIDAWELRKGM | |
Retrocopy | MLATALRRCTAAAAARGLLHPVSAPSPAAAVCSVRCYSHESHETDEEFDARWVTYSNKPDIDAWELRKGM |
Parental | NTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEE |
.TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEE | |
Retrocopy | DTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEE |
Parental | LGLDKV |
LGLDKV | |
Retrocopy | LGLDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .36 RPM | 79 .95 RPM |
SRP017611_kidney | 0 .63 RPM | 175 .57 RPM |
SRP017611_liver | 0 .47 RPM | 67 .91 RPM |