RetrogeneDB ID: | retro_cpor_770 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_27:16951649..16952098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000025917 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSCPOG00000024832 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLGTALRRCAVAATARAMPRGFLQSPATLSPVAAVLSARCYSHGSHETDEEFDARWVTYFNKPDIDAWEL |
MLGTA...C..AA.A.A.P.GFLQSPA..SPVAAV.SA.CYSHGSHETDE.F..RWVTYFN.PD.DAW.L | |
Retrocopy | MLGTAFCCCLIAASAHAVPSGFLQSPANPSPVAAVQSACCYSHGSHETDEAFNTRWVTYFNNPDVDAWKL |
Parental | RKGMNTLVGYDLVPEPKII-DAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGI |
..GMN.LV.YDLVPE.KI..DAALRACRRLN.FASAVRILEVVKDKAGP.KEI.PYVIQELRP.LNEL.I | |
Retrocopy | HEGMNILVDYDLVPELKIM<DAALRACRRLNNFASAVRILEVVKDKAGPLKEICPYVIQELRPSLNELRI |
Parental | STPEELGLDKV |
STPEELGLDKV | |
Retrocopy | STPEELGLDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 94 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 212 .41 RPM |
SRP017611_liver | 0 .00 RPM | 104 .20 RPM |
SRP040447_lung | 0 .00 RPM | 53 .19 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 433 .35 RPM |