RetrogeneDB ID: | retro_fcat_1201 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:88533034..88533379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSFCAG00000010587 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit Va [Source:HGNC Symbol;Acc:2267] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SVRCYSHG-SHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-FAS |
SV.C..HG.S..TDEEFDA.W..YFNKP.I..WEL.KGMN.LV..DLVPEP.I.DAAL.ACR..ND.FAS | |
Retrocopy | SVHCCYHG<SLKTDEEFDACWAIYFNKPNINIWELYKGMNVLVDSDLVPEPQITDAALQACRQRND<FAS |
Parental | AV--RILEVV-KDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
AV...ILEV..KDKAGPH..IYPY.IQELRPTLN.LG.STPE.LGL.KV | |
Retrocopy | AVCFCILEVI<KDKAGPHRQIYPYIIQELRPTLNQLGNSTPEDLGLIKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .68 RPM |
SRP017611_kidney | 0 .00 RPM | 144 .18 RPM |
SRP017611_liver | 0 .00 RPM | 67 .33 RPM |