RetrogeneDB ID: | retro_mmul_2255 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:118259632..118259965(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3920 | ||
Ensembl ID: | ENSMMUG00000011677 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 5A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q53CF8] |
Percent Identity: | 85.59 % |
Parental protein coverage: | 97.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GAALRRCAVAATTWAGPRGLLHSARTPGPAAAIQSVRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRK |
GAALRRCAV.AT..AGPRGLLHSA.TPGPAAAIQSV.CYSHGSHET.EEFDARWVTY.NKPDIDAWEL.K | |
Retrocopy | GAALRRCAVTATARAGPRGLLHSAPTPGPAAAIQSVHCYSHGSHETNEEFDARWVTYTNKPDIDAWELHK |
Parental | GI-NTLVTYDLVPEPKIIDAALRACRRLNDFASTVRILEAV |
G..NTLV.YDLVPEPKIID.AL..CRRLNDFAS.VRILE.V | |
Retrocopy | GMNNTLVSYDLVPEPKIIDVALWPCRRLNDFASAVRILEVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .35 RPM | 28 .91 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 42 .36 RPM |
SRP007412_cerebellum | 2 .13 RPM | 18 .15 RPM |
SRP007412_heart | 6 .12 RPM | 70 .01 RPM |
SRP007412_kidney | 3 .64 RPM | 41 .08 RPM |
SRP007412_liver | 1 .27 RPM | 33 .29 RPM |
SRP007412_testis | 3 .73 RPM | 38 .03 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1096 |