RetrogeneDB ID: | retro_btau_764 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:43676406..43677031(+) | ||
Located in intron of: | ENSBTAG00000007389 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNPS1 | ||
Ensembl ID: | ENSBTAG00000009969 | ||
Aliases: | None | ||
Description: | RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:A6QR16] |
Percent Identity: | 66.51 % |
Parental protein coverage: | 68.2 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSR |
RDK..KR.S.SSGSSS.RSRSSS.SS.GSSTST.S.SGSSSSSAS..SGSSS...SSSSSSSSGSPSPS. | |
Retrocopy | RDKSQKRHSTSSGSSSFRSRSSSASSLGSSTSTVSISGSSSSSASNGSGSSSMFPSSSSSSSSGSPSPSW |
Parental | RRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERM |
.RHDNR.RSRSK.KP..RD.KE.....PSPKPTK.H.GRLTRNV.KDHIM.IFST.GKIKMID....... | |
Retrocopy | HRHDNRWRSRSKCKPAERDGKE---KNPSPKPTKEHMGRLTRNVIKDHIMKIFSTSGKIKMIDICL*KAS |
Parental | HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRR--FSPP-RRMLPPLPMWR |
.P...K.....EFENP.E.EK.LK.MD...I..Q.ITATA..AP.P.P.PR.....PP.RRML..LP.WR | |
Retrocopy | TPIC*KAVPMHEFENPHETEKVLKLMDRE*INDQNITATASMAP*PWPTPRKSPSNPP>RRMLLLLPTWR |
Parental | RS |
RS | |
Retrocopy | RS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 38 .07 RPM |
ERP005899_muscle | 0 .11 RPM | 64 .03 RPM |
SRP017611_brain | 0 .00 RPM | 71 .76 RPM |
SRP017611_kidney | 0 .06 RPM | 66 .62 RPM |
SRP017611_liver | 0 .00 RPM | 43 .49 RPM |
SRP030211_testis | 0 .00 RPM | 81 .86 RPM |