Parental gene:

RNPS1, ENSBTAG00000009969

Aliases:None
Description:RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:A6QR16]
Organism:Cow (Bos taurus)
Coordinates:25:1780539..1789539(-)


>ENSBTAG00000009969
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCGCCTTC
TCCCACCAAACGCAAAGACCGCTCTGATGAGAAGTCCAAGGACCGCTCTAAAGATAAAGGGGCCACTAAGGAGTCGAGCG
AGAAGGATCGAGGCAGGGATAAGACTCGGAAGAGGCGCAGCGCTTCCAGCGGGAGCAGCAGCACCAGGTCCCGGTCCAGC
TCTACCTCCAGCTCAGGCTCCAGCACCAGCACGGGCTCCAGCAGCGGCTCCAGCTCGTCTTCGGCTTCGAGCCGCTCGGG
AAGTTCCAGCACGTCTCGCAGCTCCAGCTCCAGCAGCTCCTCGGGCTCCCCGAGCCCTTCTCGGCGCAGACACGACAACA
GGCGGCGTTCCCGCTCCAAGTCCAAACCACCCAAAAGAGATGAAAAGGAAAGGAAAAGGCGGAGCCCTTCCCCTAAACCC
ACCAAAGTACACATTGGGCGGCTCACCAGGAATGTGACCAAGGATCACATCATGGAGATATTCTCCACCTATGGGAAAAT
TAAAATGATTGACATGCCTGTAGAAAGGATGCACCCCCATTTGTCTAAAGGCTACGCCTATGTGGAGTTTGAGAATCCAG
ACGAGGCTGAGAAGGCGCTGAAGCACATGGACGGAGGACAAATCGATGGCCAGGAGATCACTGCCACCGCTGTGCTGGCC
CCCTGGCCCCGGCCACCCCCCCGGAGATTCAGCCCTCCCAGGAGGATGCTGCCACCTCTTCCTATGTGGCGCAGGTCACC
CCCACGGATGAGGAGAAGGTCGCGCTCCCCACGCCGTCGCTCGCCCGCGCGCCGTCGGTCCCGTTCGCCTGGGCGCCGCC
GCCACCGCAGCCGCTCCAGCTCCAACTCCTCCCGATAG

Library Parental gene expression (RPM)
ERP005899_liver 38 .07 RPM
ERP005899_muscle 64 .03 RPM
SRP017611_brain 71 .76 RPM
SRP017611_kidney 66 .62 RPM
SRP017611_liver 43 .49 RPM
SRP030211_testis 81 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017861 ortholog_one2one 1 retrogene
retro_amel_194,
Canis familiaris ENSCAFG00000019397 ortholog_one2one 1 retrogene
retro_cfam_449,
Equus caballus ENSECAG00000023288 ortholog_one2one 1 retrogene
retro_ecab_524,
Felis catus ENSFCAG00000007690 ortholog_one2one 1 retrogene
retro_fcat_248,
Homo sapiens ENSG00000205937 ortholog_one2one 1 retrogene
retro_hsap_2911,
Gorilla gorilla ENSGGOG00000014275 possible_ortholog 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2one 1 retrogene
retro_meug_1996,
Myotis lucifugus ENSMLUG00000016808 ortholog_one2one 3 retrogenes
retro_mluc_2237, retro_mluc_2618, retro_mluc_643,
Macaca mulatta ENSMMUG00000019238 ortholog_one2one 1 retrogene
retro_mmul_794,
Monodelphis domestica ENSMODG00000015891 ortholog_one2one 1 retrogene
retro_mdom_1171,
Mus musculus ENSMUSG00000034681 ortholog_one2one 1 retrogene
retro_mmus_173,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2one 1 retrogene
retro_ogar_3241,
Rattus norvegicus ENSRNOG00000008703 possible_ortholog 4 retrogenes
retro_rnor_1537, retro_rnor_2135, retro_rnor_2988, retro_rnor_649,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2one 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2one 1 retrogene
retro_itri_1160,
Tupaia belangeri ENSTBEG00000009098 ortholog_one2one 8 retrogenes
retro_tbel_1262, retro_tbel_1851, retro_tbel_2132, retro_tbel_2154, retro_tbel_2216, retro_tbel_3193, retro_tbel_3286, retro_tbel_4688,
Tarsius syrichta ENSTSYG00000001629 ortholog_one2one 1 retrogene
retro_tsyr_957,
Tursiops truncatus ENSTTRG00000008220 ortholog_one2one 7 retrogenes
retro_ttru_1010, retro_ttru_1033, retro_ttru_1558, retro_ttru_1808, retro_ttru_1809, retro_ttru_203, retro_ttru_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_85 60.94 83.93
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2. retro_btau_764 66.51 68.20
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3. retro_btau_776 63.95 94.75
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4. retro_btau_1187 55.19 76.72
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5. retro_btau_1239 65.54 57.38
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6. retro_btau_1283 66.67 78.69
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7. retro_btau_1515 63.29 67.21
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Download FASTA sequences of all ENSBTAG00000009969 retrocopies