Parental gene:

RNPS1, ENSCAFG00000019397

Aliases:None
Description:RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080]
Organism:Dog (Canis familiaris)
Coordinates:6:38722477..38728616(+)


>ENSCAFG00000019397
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGCAAAGACCGTTCTGATGAGAAGTCCAAGGATCGTTCTAAAGATAAAGGGGCCACCAAGGAGTCAAGTG
AGAAGGATCGTGGCAGGGATAAAACTCGGAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGTCCCGGTCCAGC
TCTACCTCCAGCTCAGGCTCCAGCACCAGCACAGGCTCCAGCAGTGGCTCCAGCTCTTCCTCAGCCTCTAGCCGCTCAGG
AAGTTCCAGCACATCTCGCAGTTCCAGCTCCAGCAGCTCCTCTGGCTCACCCAGTCCTTCTAGGCGTAGGCATGACAACA
GGAGGCGTTCCCGCTCCAAATCCAAACCACCCAAAAGAGATGAAAAGGAAAGGAAAAGGCGGAGTCCTTCCCCTAAACCC
ACCAAAGTACACATCGGGAGGCTCACCAGGAATGTGACCAAGGACCACATCATGGAGATATTCTCCACCTATGGGAAGAT
TAAAATGATTGACATGCCTGTAGAAAGGATGCACCCCCATCTGTCTAAAGGCTATGCATACGTGGAGTTTGAGAATCCAG
ATGAAGCCGAGAAGGCACTGAAGCACATGGATGGAGGACAAATTGATGGCCAGGAGATCACTGCCACCGCTGTGCTGGCC
CCCTGGCCTAGGCCGCCCCCCAGGCGATTCAGCCCTCCCAGGAGAATGCTGCCACCACCTCCCATGTGGCGCCGGTCACC
CCCACGGATGAGAAGAAGGTCGCGCTCCCCAAGGCGCAGGTCCCCCGTGCGCCGGCGATCTCGCTCCCCTGGCCGCCGCC
GCCACAGGAGCCGCTCCAGCTCCAACTCCTCCCGATAA

Library Parental gene expression (RPM)
SRP017611_brain 73 .83 RPM
SRP017611_kidney 35 .07 RPM
SRP017611_liver 15 .95 RPM
SRP012049_cerebellum 97 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017861 ortholog_one2one 1 retrogene
retro_amel_194,
Bos taurus ENSBTAG00000009969 ortholog_one2one 7 retrogenes
retro_btau_1187, retro_btau_1239, retro_btau_1283, retro_btau_1515, retro_btau_764, retro_btau_776, retro_btau_85,
Equus caballus ENSECAG00000023288 ortholog_one2one 1 retrogene
retro_ecab_524,
Felis catus ENSFCAG00000007690 ortholog_one2one 1 retrogene
retro_fcat_248,
Homo sapiens ENSG00000205937 ortholog_one2one 1 retrogene
retro_hsap_2911,
Gorilla gorilla ENSGGOG00000014275 possible_ortholog 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2one 1 retrogene
retro_meug_1996,
Myotis lucifugus ENSMLUG00000016808 ortholog_one2one 3 retrogenes
retro_mluc_2237, retro_mluc_2618, retro_mluc_643,
Macaca mulatta ENSMMUG00000019238 ortholog_one2one 1 retrogene
retro_mmul_794,
Monodelphis domestica ENSMODG00000015891 ortholog_one2one 1 retrogene
retro_mdom_1171,
Mus musculus ENSMUSG00000034681 ortholog_one2one 1 retrogene
retro_mmus_173,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2one 1 retrogene
retro_ogar_3241,
Rattus norvegicus ENSRNOG00000008703 possible_ortholog 4 retrogenes
retro_rnor_1537, retro_rnor_2135, retro_rnor_2988, retro_rnor_649,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2one 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2one 1 retrogene
retro_itri_1160,
Tupaia belangeri ENSTBEG00000009098 ortholog_one2one 8 retrogenes
retro_tbel_1262, retro_tbel_1851, retro_tbel_2132, retro_tbel_2154, retro_tbel_2216, retro_tbel_3193, retro_tbel_3286, retro_tbel_4688,
Tarsius syrichta ENSTSYG00000001629 ortholog_one2one 1 retrogene
retro_tsyr_957,
Tursiops truncatus ENSTTRG00000008220 ortholog_one2one 7 retrogenes
retro_ttru_1010, retro_ttru_1033, retro_ttru_1558, retro_ttru_1808, retro_ttru_1809, retro_ttru_203, retro_ttru_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_449 60.99 59.34
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Download FASTA sequences of all ENSCAFG00000019397 retrocopies