RetrogeneDB ID:

retro_ttru_203

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1550:194590..195185(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNPS1
Ensembl ID:ENSTTRG00000008220
Aliases:None
Description:RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080]


Retrocopy-Parental alignment summary:






>retro_ttru_203
AATGCTGGTTTTAGCACGGGCTCCCGCTGCGGCTGCAGCTCCTCTTCAGCCTCGAGCCGCTCCGGAAGTTCCAGCAGCTC
CCCTGGCTCTCCGAGCCCTTCTCGGCGCAGGCATGACAGCAGGCGGCGTTCCCGCTCCAAATCCAAACCACCCAAAAGAG
ACGAAAAGGAAAGGAAACGGCGGAGCCCTTCCCCTAAACCCGCCAAAGTGCACGTTGGAAGGCTCACCAGGAATGTGACC
GAGGATCACATGGAGATACTTTCCACCTACGGGAAAATTAAAATGATTGACGTGCCTGTAGAAAGGATGCACCCCCATCT
GTTTACAGGCTACGCATATGCGGAGTGTGAGAATCCAGATGAAGCCGAGAAGGCGCTGAGGCACGCGGATGGAGGACACA
TCGATGGCCAGCAGATCACTGCCACCGCTGTGCTGGCCCCCTGGCCTCGGCCACCCCCCAGGCGATTCAGCCCTCCCAGG
AAGGAGAGTGCCGCCACCGCCACCCATGTGGCGCAGCCCCCCCCCCCCCCCACAGAGGAGGAGAAGGTCGCGTCCCCCTC
GGCGCAGGTCCCCCGGCCGCCGCAGCCCCAGGAGC

ORF - retro_ttru_203 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.5 %
Parental protein coverage: 64.26 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV
..G.S..S....S.SS..SRS.SSSSS.GSPSPSRRRHD.RRRSRSKSKPPKRDEKERKRRSPSPKP.KV
RetrocopyNAGFSTGSRCGCSSSSASSRSGSSSSSPGSPSPSRRRHDSRRRSRSKSKPPKRDEKERKRRSPSPKPAKV
ParentalHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI
H.GRLTRNVT.DH.MEI.STYGKIKMID.PVERMHPHL..GYAY.E.ENPDEAEKAL.H.DGG.IDGQ.I
RetrocopyHVGRLTRNVTEDH-MEILSTYGKIKMIDVPVERMHPHLFTGYAYAECENPDEAEKALRHADGGHIDGQQI
ParentalTATAVLAPWPRPPPRRFSPPR-RMLP-PPPMWR--RSPPRMRRRSRSPRRRSPVRRRSRS
TATAVLAPWPRPPPRRFSPPR.R..P.PPPMWR........RRRSR.PRRRSP.RR..RS
RetrocopyTATAVLAPWPRPPPRRFSPPR>RRVPPPPPMWRXXXXXXQRRRRSRPPRRRSPGRRSPRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_203 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_203 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000178611 retrocopy
Bos taurus ENSBTAG000000099697 retrocopies
Canis familiaris ENSCAFG000000193971 retrocopy
Equus caballus ENSECAG000000232881 retrocopy
Felis catus ENSFCAG000000076901 retrocopy
Homo sapiens ENSG000002059371 retrocopy
Gorilla gorilla ENSGGOG000000142751 retrocopy
Macropus eugenii ENSMEUG000000088821 retrocopy
Myotis lucifugus ENSMLUG000000168083 retrocopies
Macaca mulatta ENSMMUG000000192381 retrocopy
Monodelphis domestica ENSMODG000000158911 retrocopy
Mus musculus ENSMUSG000000346811 retrocopy
Otolemur garnettii ENSOGAG000000315821 retrocopy
Rattus norvegicus ENSRNOG000000087034 retrocopies
Sarcophilus harrisii ENSSHAG000000169511 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000132001 retrocopy
Tupaia belangeri ENSTBEG000000090988 retrocopies
Tarsius syrichta ENSTSYG000000016291 retrocopy
Tursiops truncatus ENSTTRG00000008220 7 retrocopies



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