RetrogeneDB ID:

retro_btau_950

Retrocopy
location
Organism:Cow (Bos taurus)
Coordinates:21:29365161..29365368(-)
Located in intron of:ENSBTAG00000007649
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFA5
Ensembl ID:ENSBTAG00000009334
Aliases:NDUFA5, B13
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:P23935]


Retrocopy-Parental alignment summary:






>retro_btau_950
AAGCATACAGAACAGATTACAAATGAGAAGCTGAGTATGGTTAAAGCCAAACCAGATGTTAAGACACTAGAAGAGCAACT
TCACAGAGGCCAAATAGAAGAGGTAATTCTTCAGGCTGAAAATAAACTAAGTCTGGGAAGAAAAATGGTTCGGTGGAAAT
CACAGGAGTCTTTAGTGGAAGAGCCTCCTGCCAACCAGTGGAAATGG

ORF - retro_btau_950 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.71 %
Parental protein coverage: 59.48 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKYTEQITNEKLSMVKAEPDVKKLEERLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPPASQWKW
K.TEQITNEKLSMVKA.PDVK.LEE.L..GQIEEVILQAEN.LSL.RKM..WK..E.LVEEPPA.QWKW
RetrocopyKHTEQITNEKLSMVKAKPDVKTLEEQLHRGQIEEVILQAENKLSLGRKMVRWKSQESLVEEPPANQWKW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
ERP005899_liver 0 .07 RPM 10 .09 RPM
ERP005899_muscle 0 .00 RPM 18 .37 RPM
SRP017611_brain 0 .05 RPM 24 .58 RPM
SRP017611_kidney 0 .00 RPM 31 .06 RPM
SRP017611_liver 0 .00 RPM 12 .38 RPM
SRP030211_testis 0 .01 RPM 30 .25 RPM
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_950 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_950 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_btau_950 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 17 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000045122 retrocopies
Bos taurus ENSBTAG00000009334 5 retrocopies
Canis familiaris ENSCAFG000000251124 retrocopies
Callithrix jacchus ENSCJAG000000174491 retrocopy
Felis catus ENSFCAG000000271255 retrocopies
Homo sapiens ENSG0000012860910 retrocopies
Gorilla gorilla ENSGGOG000000229229 retrocopies
Loxodonta africana ENSLAFG000000309711 retrocopy
Monodelphis domestica ENSMODG000000153844 retrocopies
Mustela putorius furoENSMPUG000000068114 retrocopies
Mus musculus ENSMUSG000000230892 retrocopies
Otolemur garnettii ENSOGAG000000331376 retrocopies
Pongo abelii ENSPPYG0000001795610 retrocopies
Pan troglodytes ENSPTRG0000001963710 retrocopies
Rattus norvegicus ENSRNOG000000056983 retrocopies
Sus scrofa ENSSSCG000000166072 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000274041 retrocopy



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