RetrogeneDB ID: | retro_rnor_2154 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:80131123..80131470(+) | ||
Located in intron of: | ENSRNOG00000025076 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000014899 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufa5 | ||
Ensembl ID: | ENSRNOG00000005698 | ||
Aliases: | Ndufa5, NADHUO | ||
Description: | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q63362] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGLVKKTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPDVKKLEN |
MAGLVKKTTGLVGLAVCDTPHERLTILYTK.LDLLKHFPKHAAYRKYTE.ITSEKL..VKLEPDVKKLEN | |
Retrocopy | MAGLVKKTTGLVGLAVCDTPHERLTILYTKFLDLLKHFPKHAAYRKYTEPITSEKLDMVKLEPDVKKLEN |
Parental | LLQGGEVEEVILQAEKELSLARKMLQWKPWEPLVEE-PPANQWKWPI |
LLQGGEVEEVILQAEKELSLARKMLQWKP.EPLVE..PPA.QWKWPI | |
Retrocopy | LLQGGEVEEVILQAEKELSLARKMLQWKPGEPLVED<PPADQWKWPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .66 RPM |
SRP017611_liver | 0 .00 RPM | 16 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004512 | 2 retrocopies | |
Bos taurus | ENSBTAG00000009334 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000025112 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000017449 | 1 retrocopy | |
Felis catus | ENSFCAG00000027125 | 5 retrocopies | |
Homo sapiens | ENSG00000128609 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000022922 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000030971 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015384 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000006811 | 4 retrocopies | |
Mus musculus | ENSMUSG00000023089 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000033137 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000017956 | 10 retrocopies | |
Pan troglodytes | ENSPTRG00000019637 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000005698 | 3 retrocopies |
retro_rnor_1041, retro_rnor_2154 , retro_rnor_2290,
|
Sus scrofa | ENSSSCG00000016607 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027404 | 1 retrocopy |