RetrogeneDB ID: | retro_ggor_840 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:126545305..126545589(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA5 | ||
Ensembl ID: | ENSGGOG00000022922 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0MQA1] |
Percent Identity: | 70.83 % |
Parental protein coverage: | 81.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLA |
.RLR..Y.KI.DVLE.IPK.AAYRKYTEQI..EKLAM.K.EP.VKKLEDQLQGGQ..EVIL....EL.LA | |
Retrocopy | KRLRVWYRKIIDVLEQIPKTAAYRKYTEQIIKEKLAMGKVEPAVKKLEDQLQGGQVQEVILHTADELSLA |
Parental | RKMREW-KLWEPLVEEPPADQWKWPI |
RKM....K.WE.LVEEPP..QW.WPI | |
Retrocopy | RKMSRG<KPWELLVEEPPPSQWRWPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 38 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 21 .63 RPM |
SRP007412_heart | 0 .00 RPM | 17 .26 RPM |
SRP007412_kidney | 0 .00 RPM | 56 .59 RPM |
SRP007412_liver | 0 .00 RPM | 21 .71 RPM |
SRP007412_testis | 0 .00 RPM | 21 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1065 |
Pan troglodytes | retro_ptro_725 |
Pongo abelii | retro_pabe_887 |