Parental gene:

ENSCAFG00000025112

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:14:11995993..12008054(+)


>ENSCAFG00000025112
ATGGCGGGTGTGCTGAAGAAGACCACCGGCCTTGTGGGATTGGCTGTATGTGAGAGCCCACACGAGAGGTTAAGAATATT
GTACACAAAGATTCTTGATGTTCTTGAGCAAATTCCTAAAAACGCAGCATATAGAAAGTATACAGAACAGATTACAAATG
AGAAGCTGAGTATGGTTAAAGCGGAACCAGATGTTAAGAAACTAGAAGACCAACTTCAGGGTGGCCAACTAGAAGAGGTG
ATTCTTCAGGCTGAAAATGAATTAAGTCTGGCAAGAAAAATGATACAGTGGAAACCATGGGAGCCTTTAGTGGAAGAGCC
TCCTGCCAACCAATGGAAATGGCCAATATAA

Library Parental gene expression (RPM)
SRP017611_brain 22 .31 RPM
SRP017611_kidney 80 .70 RPM
SRP017611_liver 14 .21 RPM
SRP012049_cerebellum 35 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004512 ortholog_one2many 2 retrogenes
retro_amel_1543, retro_amel_695,
Bos taurus ENSBTAG00000009334 ortholog_one2many 5 retrogenes
retro_btau_1258, retro_btau_1613, retro_btau_537, retro_btau_808, retro_btau_950,
Callithrix jacchus ENSCJAG00000017449 ortholog_many2many 1 retrogene
retro_cjac_65,
Felis catus ENSFCAG00000027125 ortholog_one2many 5 retrogenes
retro_fcat_1081, retro_fcat_1278, retro_fcat_244, retro_fcat_550, retro_fcat_799,
Homo sapiens ENSG00000128609 ortholog_one2many 10 retrogenes
retro_hsap_1065, retro_hsap_1687, retro_hsap_2671, retro_hsap_3218, retro_hsap_3627, retro_hsap_3950, retro_hsap_3997, retro_hsap_4248, retro_hsap_745, retro_hsap_746,
Gorilla gorilla ENSGGOG00000022922 ortholog_one2many 9 retrogenes
retro_ggor_1264, retro_ggor_1864, retro_ggor_2185, retro_ggor_2447, retro_ggor_2654, retro_ggor_2683, retro_ggor_2848, retro_ggor_624, retro_ggor_840,
Loxodonta africana ENSLAFG00000030971 ortholog_one2many 1 retrogene
retro_lafr_275,
Monodelphis domestica ENSMODG00000015384 ortholog_one2many 4 retrogenes
retro_mdom_1292, retro_mdom_1429, retro_mdom_1804, retro_mdom_525,
Mustela putorius furo ENSMPUG00000006811 ortholog_one2many 4 retrogenes
retro_mputfur_1151, retro_mputfur_1353, retro_mputfur_683, retro_mputfur_939,
Mus musculus ENSMUSG00000023089 ortholog_one2many 2 retrogenes
retro_mmus_2951, retro_mmus_853,
Otolemur garnettii ENSOGAG00000033137 ortholog_one2many 6 retrogenes
retro_ogar_1346, retro_ogar_1504, retro_ogar_1791, retro_ogar_2047, retro_ogar_2676, retro_ogar_649,
Pongo abelii ENSPPYG00000017956 ortholog_one2many 10 retrogenes
retro_pabe_1389, retro_pabe_2216, retro_pabe_2666, retro_pabe_2794, retro_pabe_2795, retro_pabe_2975, retro_pabe_3283, retro_pabe_3390, retro_pabe_3728, retro_pabe_887,
Pan troglodytes ENSPTRG00000019637 ortholog_one2many 10 retrogenes
retro_ptro_1141, retro_ptro_1800, retro_ptro_2235, retro_ptro_2452, retro_ptro_2682, retro_ptro_2714, retro_ptro_2888, retro_ptro_2937, retro_ptro_529, retro_ptro_725,
Rattus norvegicus ENSRNOG00000005698 ortholog_one2many 3 retrogenes
retro_rnor_1041, retro_rnor_2154, retro_rnor_2290,
Sus scrofa ENSSSCG00000016607 ortholog_one2many 2 retrogenes
retro_sscr_1029, retro_sscr_693,
Ictidomys tridecemlineatus ENSSTOG00000027404 ortholog_one2many 1 retrogene
retro_itri_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_302 87.21 73.28
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2. retro_cfam_445 80.90 76.72
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3. retro_cfam_882 79.05 90.52
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4. retro_cfam_921 85.84 97.41
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Download FASTA sequences of all ENSCAFG00000025112 retrocopies