RetrogeneDB ID: | retro_ptro_2714 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:102900898..102901242(+) | ||
Located in intron of: | ENSPTRG00000020497 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFA5 | ||
Ensembl ID: | ENSPTRG00000019637 | ||
Aliases: | None | ||
Description: | Pan troglodytes NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa (NDUFA5), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001071797] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLED |
..GVLK.TTGLVGLA.C..P.ERLRILYTKILDVLE.IP.NAA.RKYTEQI.NEKLA.VK.EPDVKKLED | |
Retrocopy | IVGVLK-TTGLVGLAICKSP*ERLRILYTKILDVLEQIPENAAHRKYTEQIINEKLAIVKVEPDVKKLED |
Parental | QLQGGQLEEVILQAEHELNLARKMREWKLWEP-LVEEPPADQWKWPI |
Q.QG.Q.EEVI.Q.E..L.L.RKM...K.WEP.L..EPPA.QWKWPI | |
Retrocopy | QPQGDQVEEVIPQVEN*LSLVRKMMQ*KPWEP<LG*EPPANQWKWPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 37 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .74 RPM |
SRP007412_heart | 0 .00 RPM | 72 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .79 RPM |
SRP007412_liver | 0 .03 RPM | 13 .98 RPM |
SRP007412_testis | 0 .00 RPM | 15 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3997 |
Gorilla gorilla | retro_ggor_2683 |