RetrogeneDB ID: | retro_cfam_1883 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:59359886..59360173(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.37 % |
Parental protein coverage: | 95.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLP |
AFRK.LPLF....VERS...TV..G.I.L.EKSQGKVLQATVVA.GSGSKGK.GEIQPV..KVG..V.L. | |
Retrocopy | AFRKILPLFNQGEVERSTGKTVNRGTIVLLEKSQGKVLQATVVAIGSGSKGKDGEIQPVIMKVGV*VFL- |
Parental | EYGGTKVVLD-DKDYFLFRDGDILGKYV |
.YGGT..VLD..K.YFLFRDGD.L..Y. | |
Retrocopy | GYGGTTKVLD<HKNYFLFRDGDNLVEYM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 42 .71 RPM |
SRP017611_brain | 0 .00 RPM | 30 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .92 RPM |
SRP017611_liver | 0 .00 RPM | 41 .99 RPM |