RetrogeneDB ID: | retro_rnor_984 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:103524925..103525173(-) | ||
Located in intron of: | ENSRNOG00000002879 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSRNOG00000014868 | ||
Aliases: | Hspe1, Cpn10 | ||
Description: | 10 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P26772] |
Percent Identity: | 70.24 % |
Parental protein coverage: | 81.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKGGEIQPVSVKVGDK-VLLPEYGGTKVVLDDKDY |
R..A.TVTK..I...EKS...VLQATVVAVGSG.KG.GG..QPVSVK.GD..V.LPE.GGTKVVLD.KDY | |
Retrocopy | RRTAGTVTKAAIPSSEKSPERVLQATVVAVGSGPKGRGGGVQPVSVKFGDQ<VCLPEHGGTKVVLDNKDY |
Parental | FLFRDGDILGKYVD |
FL.RDGDI.G.Y.D | |
Retrocopy | FLLRDGDIPGQYAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 30 .34 RPM |
SRP017611_kidney | 0 .28 RPM | 113 .47 RPM |
SRP017611_liver | 1 .34 RPM | 45 .72 RPM |