RetrogeneDB ID:

retro_fcat_794

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B2:122698192..122698435(-)
Located in intron of:ENSFCAG00000011142
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000014455
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_794
GAAAAGAGTACAGTCCAAACTTTAACCGAAGGAGGCATTATGCTTCCAGAAAAATCTTAGGGAAAAGTATAGGAAAAAGC
AACAGTAGTGGCTATTGGATTGGGCTCTCAAGGAAAGGGTGGGGAGGTTTCATTATTAGCATGAAAATTGGAAATAAAGT
TCTTCCAGAACAAGGAGGCAGCAAAATAGTTCTAAAGAAGACTTATTTTTTTATTTAGAGACGGTGACATTCTTGGTGAG
TAT

ORF - retro_fcat_794 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.71 %
Parental protein coverage: 80.39 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalERSAAETVTKGGIMLPEKSQGKV-LQATVVAVGSGSKGKGGEIQ-PVSVKVGDKVLLPEYGGTKVVLDDK
E.S...T.T.GGIMLPEKS.GKV...ATVVA.G.GS.GKGGE.....S.K.G.KV.LPE.GG.K.VL..K
RetrocopyEKSTVQTLTEGGIMLPEKS*GKV*EKATVVAIGLGSQGKGGEVS<IISMKIGNKV-LPEQGGSKIVL-KK
ParentalDY-FLFRDGDILGKY
.Y.FLFRDGDILG.Y
RetrocopyTY>FLFRDGDILGEY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 25 .94 RPM
SRP017611_kidney 0 .00 RPM 160 .87 RPM
SRP017611_liver 0 .00 RPM 105 .54 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_794 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_794 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 141 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001376918 retrocopies
Bos taurus ENSBTAG000000125894 retrocopies
Canis familiaris ENSCAFG000000108904 retrocopies
Choloepus hoffmanni ENSCHOG0000000741717 retrocopies
Dasypus novemcinctus ENSDNOG0000001324627 retrocopies
Equus caballus ENSECAG000000268741 retrocopy
Erinaceus europaeus ENSEEUG000000050406 retrocopies
Felis catus ENSFCAG00000014455 9 retrocopies
Loxodonta africana ENSLAFG000000000571 retrocopy
Myotis lucifugus ENSMLUG000000008784 retrocopies
Mus musculus ENSMUSG0000007367611 retrocopies
Oryctolagus cuniculus ENSOCUG000000103601 retrocopy
Otolemur garnettii ENSOGAG0000003443424 retrocopies
Rattus norvegicus ENSRNOG000000148686 retrocopies
Vicugna pacos ENSVPAG000000058058 retrocopies



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