RetrogeneDB ID: | retro_cfam_775 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:36496256..36496514(-) | ||
Located in intron of: | ENSCAFG00000007139 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000006913 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAEDIKSKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV |
M.EDIKSKIK.YQ.APFDSRFP..NQTRNCW.NYLDFHRCEKAM.AKGGDVS.C.WYR.VYKSLCPISWV | |
Retrocopy | MGEDIKSKIKDYQSAPFDSRFPK*NQTRNCWHNYLDFHRCEKAMAAKGGDVSMCKWYRHVYKSLCPISWV |
Parental | SAWDDRRAEGTFPGKI |
.AWDD..AEGTFPGKI | |
Retrocopy | LAWDDLWAEGTFPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .63 RPM | 97 .52 RPM |
SRP017611_brain | 0 .56 RPM | 59 .70 RPM |
SRP017611_kidney | 1 .25 RPM | 255 .37 RPM |
SRP017611_liver | 0 .29 RPM | 64 .68 RPM |