RetrogeneDB ID:

retro_fcat_783

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B2:96898234..96898481(-)
Located in intron of:ENSFCAG00000005058
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000006378
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_783
ATGGCAGAAGACATCAAGAAGTACCGGACTGACCCTTTTAGACAGGTGCCTCCCCAACCAGAACCAGACCAGGAACTGCT
GGCAGAACTTTGTGGACTTCCACCACTGTGAAAATACAATGGTTGCTAAAGGGGGTGATGTCTCCACGTGTGAATGGTAC
CACCATGTATGCAAGTCCCTCTGCCCCATATTCTAGGTGTCAGCCTAGGATGACCTCTCAGCAGAAGGCACACTTGCTAG
GAAGGTG

ORF - retro_fcat_783 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.64 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAEDIKTKIKNYQTAPF-DSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISW
MAED....IK.Y.T.PF.D...PNQNQTRNCWQN..DFH.CE..M.AKGGDVS.CEWY..V.KSLCPI..
RetrocopyMAED----IKKYRTDPF>DRCLPNQNQTRNCWQNFVDFHHCENTMVAKGGDVSTCEWYHHVCKSLCPI-F
ParentalWVAAWDDRRAEGTFPGKI
.V.A.DD..AEGT...K.
Retrocopy*VSA*DDLSAEGTLARKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 58 .53 RPM
SRP017611_kidney 0 .00 RPM 91 .00 RPM
SRP017611_liver 0 .00 RPM 34 .57 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_783 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_783 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 83 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000005633 retrocopies
Canis familiaris ENSCAFG000000069137 retrocopies
Callithrix jacchus ENSCJAG000000102115 retrocopies
Equus caballus ENSECAG000000123173 retrocopies
Felis catus ENSFCAG00000006378 5 retrocopies
Homo sapiens ENSG000001262675 retrocopies
Microcebus murinus ENSMICG000000099025 retrocopies
Myotis lucifugus ENSMLUG000000113654 retrocopies
Macaca mulatta ENSMMUG000000167655 retrocopies
Monodelphis domestica ENSMODG000000139621 retrocopy
Mustela putorius furoENSMPUG000000062581 retrocopy
Mus musculus ENSMUSG000000367511 retrocopy
Nomascus leucogenys ENSNLEG000000112835 retrocopies
Oryctolagus cuniculus ENSOCUG000000096062 retrocopies
Otolemur garnettii ENSOGAG000000041484 retrocopies
Oryzias latipes ENSORLG000000060701 retrocopy
Pan troglodytes ENSPTRG000000108544 retrocopies
Pteropus vampyrus ENSPVAG000000128218 retrocopies
Rattus norvegicus ENSRNOG000000243091 retrocopy
Sorex araneus ENSSARG000000107711 retrocopy
Sus scrofa ENSSSCG000000029072 retrocopies
Tarsius syrichta ENSTSYG000000145638 retrocopies
Tursiops truncatus ENSTTRG000000022412 retrocopies



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