Parental gene:

COX6B1, ENSECAG00000012317

Aliases:None
Description:cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:2280]
Organism:Horse (Equus caballus)
Coordinates:10:6874995..6882582(+)


>ENSECAG00000012317
ATGGCAGAAGACATTAAGAGCAAAATCAAGAACTACCAGACTGCCCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGAC
CAGGAACTGCTGGCAGAACTATCTGGACTTCCACCGCTGTGAGAAGGCAATGACTGCTAAAGGGGGTGATGTCTCCGTGT
GCGAATGGTACCGGCGTGTGTACAAGTCCCTGTGCCCCCTATCCTGGGTGTCAGCCTGGGACGACCGCCGGGCGGAAGGC
ACATTTCCTGGGAAGATCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 58 .50 RPM
SRP021940_embryo 93 .90 RPM
SRP021940_cerebellum 127 .34 RPM
SRP021940_testis 58 .64 RPM
SRP021940_placental_villous 73 .95 RPM
SRP021940_articular_cartilage 41 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000563 ortholog_one2one 3 retrogenes
retro_amel_1653, retro_amel_581, retro_amel_775,
Canis familiaris ENSCAFG00000006913 ortholog_one2many 7 retrogenes
retro_cfam_1614, retro_cfam_1760, retro_cfam_517, retro_cfam_6, retro_cfam_775, retro_cfam_830, retro_cfam_929,
Callithrix jacchus ENSCJAG00000010211 ortholog_one2many 5 retrogenes
retro_cjac_1513, retro_cjac_2007, retro_cjac_268, retro_cjac_2870, retro_cjac_2924,
Felis catus ENSFCAG00000006378 ortholog_one2many 5 retrogenes
retro_fcat_107, retro_fcat_2017, retro_fcat_293, retro_fcat_758, retro_fcat_783,
Homo sapiens ENSG00000126267 ortholog_one2one 5 retrogenes
retro_hsap_1762, retro_hsap_2906, retro_hsap_3807, retro_hsap_4032, retro_hsap_4089,
Microcebus murinus ENSMICG00000009902 ortholog_one2one 5 retrogenes
retro_mmur_1099, retro_mmur_1413, retro_mmur_1588, retro_mmur_77, retro_mmur_809,
Myotis lucifugus ENSMLUG00000011365 ortholog_one2many 4 retrogenes
retro_mluc_2244, retro_mluc_2455, retro_mluc_55, retro_mluc_933,
Macaca mulatta ENSMMUG00000016765 ortholog_one2many 5 retrogenes
retro_mmul_1212, retro_mmul_1227, retro_mmul_1655, retro_mmul_1989, retro_mmul_2327,
Monodelphis domestica ENSMODG00000013962 ortholog_one2one 1 retrogene
retro_mdom_1046,
Mustela putorius furo ENSMPUG00000006258 ortholog_one2many 1 retrogene
retro_mputfur_998,
Mus musculus ENSMUSG00000036751 ortholog_one2one 1 retrogene
retro_mmus_2498,
Nomascus leucogenys ENSNLEG00000011283 ortholog_one2one 5 retrogenes
retro_nleu_1914, retro_nleu_2396, retro_nleu_2829, retro_nleu_2845, retro_nleu_978,
Oryctolagus cuniculus ENSOCUG00000009606 ortholog_one2one 2 retrogenes
retro_ocun_1797, retro_ocun_840,
Otolemur garnettii ENSOGAG00000004148 ortholog_one2one 4 retrogenes
retro_ogar_1903, retro_ogar_3033, retro_ogar_3447, retro_ogar_553,
Oryzias latipes ENSORLG00000006070 possible_ortholog 1 retrogene
retro_olat_4,
Pan troglodytes ENSPTRG00000010854 ortholog_one2one 4 retrogenes
retro_ptro_1209, retro_ptro_1964, retro_ptro_2583, retro_ptro_2733,
Pteropus vampyrus ENSPVAG00000012821 ortholog_one2one 8 retrogenes
retro_pvam_1031, retro_pvam_1044, retro_pvam_1331, retro_pvam_303, retro_pvam_336, retro_pvam_576, retro_pvam_717, retro_pvam_757,
Rattus norvegicus ENSRNOG00000024309 ortholog_one2many 1 retrogene
retro_rnor_201,
Sorex araneus ENSSARG00000010771 ortholog_one2one 1 retrogene
retro_sara_51,
Sus scrofa ENSSSCG00000002907 ortholog_one2many 2 retrogenes
retro_sscr_780, retro_sscr_89,
Tarsius syrichta ENSTSYG00000014563 ortholog_one2one 8 retrogenes
retro_tsyr_1179, retro_tsyr_1257, retro_tsyr_1260, retro_tsyr_1897, retro_tsyr_44, retro_tsyr_486, retro_tsyr_78, retro_tsyr_80,
Tursiops truncatus ENSTTRG00000002241 ortholog_one2one 2 retrogenes
retro_ttru_619, retro_ttru_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_190 63.08 74.42
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2. retro_ecab_719 83.72 100.00
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3. retro_ecab_1051 64.62 74.42
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Download FASTA sequences of all ENSECAG00000012317 retrocopies