RetrogeneDB ID: | retro_ocun_1797 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018907:316644..316899(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023984 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX6B1 | ||
Ensembl ID: | ENSOCUG00000009606 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:2280] |
Percent Identity: | 96.47 % |
Parental protein coverage: | 98.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AEDIKTKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVS |
AEDIKTKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFH.CEKAMTAKGGD.SVCEWYRRVYKSLCPISWVS | |
Retrocopy | AEDIKTKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHLCEKAMTAKGGDISVCEWYRRVYKSLCPISWVS |
Parental | AWDERRAEGTFPGKI |
AWDERRA.GTFPGKI | |
Retrocopy | AWDERRAKGTFPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 15 .07 RPM | 103 .75 RPM |
SRP017611_kidney | 8 .21 RPM | 162 .58 RPM |
SRP017611_liver | 3 .47 RPM | 24 .82 RPM |