RetrogeneDB ID: | retro_fcat_2017 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:109544273..109544517(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000006378 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.07 % |
Parental protein coverage: | 93.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISW-WVAAWD |
T.IKNYQT.PFDSRFPNQNQTR.CWQN.LD...C..AMTA.....S..EWY.RV..SLC..SW....AWD | |
Retrocopy | TQIKNYQTTPFDSRFPNQNQTRKCWQNSLDLPHCDRAMTAQRDAISAWEWYLRVFRSLCLASW>CQSAWD |
Parental | DRRAEGTFPGKI |
DRRAEGT..GKI | |
Retrocopy | DRRAEGTSRGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 91 .00 RPM |
SRP017611_liver | 0 .00 RPM | 34 .57 RPM |