RetrogeneDB ID: | retro_sscr_89 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:28712770..28713019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000002834 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000002907 | ||
Aliases: | None | ||
Description: | Sus scrofa COX6B protein (COX6B), mRNA. [Source:RefSeq mRNA;Acc:NM_001097497] |
Percent Identity: | 84.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEDIQTKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV |
MAEDIQTKIKNYQTAPF.S.FP.QNQTRNCWQNYLDFH.CEKAMTAKGGD.SVCEWY.RVYKSL....WV | |
Retrocopy | MAEDIQTKIKNYQTAPFESHFPSQNQTRNCWQNYLDFHCCEKAMTAKGGDTSVCEWYQRVYKSL----WV |
Parental | SAWDDRRAEGTFPGKI |
SAW...RAEGTFPGKI | |
Retrocopy | SAWHVHRAEGTFPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 103 .80 RPM |
SRP014902_testis | 0 .00 RPM | 44 .70 RPM |
SRP018288_heart | 0 .00 RPM | 328 .70 RPM |
SRP018288_kidney | 0 .89 RPM | 178 .49 RPM |
SRP018288_liver | 0 .96 RPM | 79 .48 RPM |
SRP018288_lung | 0 .10 RPM | 42 .87 RPM |
SRP018856_adipose | 0 .00 RPM | 114 .89 RPM |
SRP035408_brain | 0 .00 RPM | 194 .95 RPM |
SRP035408_liver | 0 .03 RPM | 130 .75 RPM |