RetrogeneDB ID: | retro_cjac_186 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:149912105..149912732(+) | ||
Located in intron of: | ENSCJAG00000012160 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022770 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000009796 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPV |
MGSVSNQQFAGGCAK.AEEAPEEAP.DAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARA.VALDPPV | |
Retrocopy | MGSVSNQQFAGGCAKVAEEAPEEAPADAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARARVALDPPV |
Parental | DVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRCY |
.VFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESI.VTGPG.VFCIGSERRPKGKNMQKRRS.GDRCY | |
Retrocopy | NVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIGVTGPGWVFCIGSERRPKGKNMQKRRS-GDRCY |
Parental | NCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQAPSAQGKPTYFREEEEEIHSPTLLPEAQN |
NCGGLD.HA.ECKLPPQPKKCH.CQSISHMVASCPLKAQQAPSAQGKPTYF.EEEEEI.SP.LLPEAQN | |
Retrocopy | NCGGLDQHAEECKLPPQPKKCHCCQSISHMVASCPLKAQQAPSAQGKPTYFWEEEEEIYSPALLPEAQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 0 .00 RPM |
SRP051959_heart | 0 .09 RPM | 0 .00 RPM |
SRP051959_kidney | 0 .07 RPM | 0 .00 RPM |
SRP051959_liver | 0 .04 RPM | 0 .00 RPM |
SRP051959_lung | 0 .10 RPM | 0 .00 RPM |
SRP051959_lymph_node | 0 .18 RPM | 0 .00 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 0 .00 RPM |
SRP051959_spleen | 0 .11 RPM | 0 .02 RPM |