RetrogeneDB ID: | retro_pabe_2849 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:30499621..30500248(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIN28A | ||
Ensembl ID: | ENSPPYG00000001684 | ||
Aliases: | None | ||
Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
Percent Identity: | 93.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGSVSNQQFAGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPV |
.GSVSNQQFAGGCAKAAE...E.APEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGV.LD.PV | |
Retrocopy | LGSVSNQQFAGGCAKAAEKTSEAAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVTLDSPV |
Parental | DVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRCY |
DVFVHQSKLHME.FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRCY | |
Retrocopy | DVFVHQSKLHMERFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQKRRSKGDRCY |
Parental | NCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGKPTYFREEEEEIHSPALLPEAQN |
NCGGLDHH..ECKLPPQ.KKCHFCQSISHMVAS.PLKAQQGPSA.GKPTYFREEEEEIHS.ALLPEAQN | |
Retrocopy | NCGGLDHHVDECKLPPQAKKCHFCQSISHMVASRPLKAQQGPSARGKPTYFREEEEEIHSRALLPEAQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |